Mercurial > repos > idot > prop_venn
view README.md @ 1:cc6707a1e044 draft default tip
added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
| author | Ido Tamir <ido.tamir@imp.ac.at> |
|---|---|
| date | Mon, 24 Sep 2012 16:46:21 +0200 |
| parents | 8ea9b4e5a389 |
| children |
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prop_venn --------- crates proportional venn diagrams from 2 or 3 files using google charts. pure python implementation contains galaxy tool xml (prop_venn.xml) cli interface expects all arguments for the inputs concatenated with , i.e. file1,file2,file3 ... contains an integration test for the cli interface (vennerTest.py), no galaxy unit tests. CLI example: python venner.py --files testFiles/fileA.tab,testFiles/fileB.tab --columns 1,1 --outname out.html --asNames As,Bs Proportional Venn Diagram: -------------------------- Creates a proportional Venn diagram from 2 or 3 tab delimited input files. The 0 based column index decides which column is used for extracting the sets to compare between the files. Multiple items with the same value per column are counted as one. Requirements: ------------- - 2-3 tab delimited input files. - 0 based index of the columns to extract for each file Outputs: -------- - Html page with the proportional Venn diagram and a table for the counts in each set.