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added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
author Ido Tamir <ido.tamir@imp.ac.at>
date Mon, 24 Sep 2012 16:46:21 +0200
parents 8ea9b4e5a389
children
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1 prop_venn
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2 ---------
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4 crates proportional venn diagrams from 2 or 3 files using google charts.
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5 pure python implementation
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7 contains galaxy tool xml (prop_venn.xml)
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9 cli interface expects all arguments for the inputs concatenated
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10 with , i.e. file1,file2,file3 ...
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12 contains an integration test for the cli interface (vennerTest.py), no galaxy unit tests.
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cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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14 CLI example:
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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15 python venner.py --files testFiles/fileA.tab,testFiles/fileB.tab --columns 1,1 --outname out.html --asNames As,Bs
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17 Proportional Venn Diagram:
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18 --------------------------
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19 Creates a proportional Venn diagram from 2 or 3 tab delimited input files.
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20 The 0 based column index decides which column is used for extracting the sets to compare between the files.
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21 Multiple items with the same value per column are counted as one.
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23 Requirements:
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24 -------------
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25 - 2-3 tab delimited input files.
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26 - 0 based index of the columns to extract for each file
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28 Outputs:
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29 --------
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cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
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30 - Html page with the proportional Venn diagram and a table for the counts in each set.
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