Mercurial > repos > ieguinoa > data_manager_fetch_tx2gene
changeset 4:bacd91d8b05a draft
Uploaded
| author | ieguinoa |
|---|---|
| date | Sun, 21 Oct 2018 17:48:48 -0400 |
| parents | d71f65b854de |
| children | c380b7da5b65 |
| files | data_manager/.Rhistory data_manager/data_manager_fetch_tx2gene.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/data_manager_fetch_tx2gene.xml Fri Oct 19 07:36:02 2018 -0400 +++ b/data_manager/data_manager_fetch_tx2gene.xml Sun Oct 21 17:48:48 2018 -0400 @@ -1,7 +1,7 @@ <tool id="data_manager_fetch_tx2gene" name="Create entries in tx2gene data table" version="0.0.1" tool_type="manage_data"> <description>fetching</description> <requirements> - <requirement type="package" version="1.26.4">bioconductor-genomicfeatures</requirement> + <requirement type="package" version="1.32.3">bioconductor-genomicfeatures</requirement> <requirement type="package">r-getopt</requirement> </requirements> @@ -18,7 +18,7 @@ <param type="text" name="sequence_name" value="" label="Name of sequence" /> <param type="text" name="sequence_id" value="" label="ID for sequence" /> - <param name="file_type" type="select" label="Select input type: GFF/GTF file(features will be extracted to create tx2gene table) or transcript to gene table file(tab separated)"> + <param name="file_type" type="select" label="Select input type: GFF/GTF file(features will be extracted to create tx2gene table) or transcript to gene table file(tab separated)" help="When using GFF3/GTF files as input, transcript feaatures must contain a transcript_id attribute."> <option value="gtf">GTF file</option> <option value="gff3">GFF3 file</option> <option value="tx2gene">tx2gene</option> @@ -60,7 +60,7 @@ <help> **What it does** -Fetches a gff file from various sources (URL, Galaxy History, or a server directory) and populates the "all_gff" data table. +Populate the tx2gene data table with transcript-genes mapping tables. ------