annotate data_manager_conf.xml @ 6:d22f69a2e80e draft

Uploaded
author ieguinoa
date Tue, 23 Jul 2019 09:25:04 -0400
parents 3888ec1918d0
children cbe62bd6e149
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
1 <?xml version="1.0"?>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
2 <data_managers>
1
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
3 <data_manager tool_file="data_manager/salmon_index_builder.xml" id="salmon_index_builder" version="0.1">
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
4 <data_table name="salmon_indexes">
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
5 <output>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
6 <column name="value" />
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
7 <column name="dbkey" />
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
8 <column name="name" />
1
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
9 <column name="path" output_ref="out_file" >
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
10 <move type="directory" relativize_symlinks="True">
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
6
d22f69a2e80e Uploaded
ieguinoa
parents: 5
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/salmon_index/${value}</target>
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
13 </move>
6
d22f69a2e80e Uploaded
ieguinoa
parents: 5
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/salmon_index/${value}/${path}</value_translation>
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
16 </column>
6
d22f69a2e80e Uploaded
ieguinoa
parents: 5
diff changeset
17 <column name="version" />
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
18 </output>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
19 </data_table>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
20 </data_manager>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
21 </data_managers>