Mercurial > repos > ieguinoa > tximport
diff test-data/Araport11_subset.gff3 @ 0:2f5e9c0fe367 draft default tip
"planemo upload for repository https://github.com/ieguinoa/tximport-galaxy-wrapper commit 2bb25471c1320fb1206afa2c4daf536b6d6e275f-dirty"
| author | ieguinoa |
|---|---|
| date | Wed, 09 Oct 2019 15:38:21 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Araport11_subset.gff3 Wed Oct 09 15:38:21 2019 -0400 @@ -0,0 +1,106 @@ +Chr1 Araport11 gene 3631 5899 . + . ID=AT1G01010;Alias=ANAC001,NAC domain containing protein 1;symbol=NAC001;tid=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 mRNA 3631 5899 . + . ID=AT1G01010.1;Parent=AT1G01010;Name=AT1G01010.1;gene_id=AT1G01010 +Chr1 Araport11 exon 3631 3913 . + . ID=AT1G01010.1:exon:1;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 five_prime_UTR 3631 3759 . + . ID=AT1G01010.1:five_prime_UTR;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 exon 3996 4276 . + . ID=AT1G01010.1:exon:2;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 exon 4486 4605 . + . ID=AT1G01010.1:exon:3;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 exon 4706 5095 . + . ID=AT1G01010.1:exon:4;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 exon 5174 5326 . + . ID=AT1G01010.1:exon:5;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 exon 5439 5899 . + . ID=AT1G01010.1:exon:6;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 five_prime_UTR 3759 5439 . + . ID=AT1G01010.1:five_prime_UTR;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 three_prime_UTR 5631 5899 . + . ID=AT1G01010.1:three_prime_UTR;Parent=AT1G01010.1;Name=AT1G01010;gene_id=AT1G01010 +Chr1 Araport11 gene 6788 9130 . - . ID=AT1G01020;symbol=ARV1;tid=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 mRNA 6788 9130 . - . ID=AT1G01020.5;Parent=AT1G01020;Name=AT1G01020.5;gene_id=AT1G01020 +Chr1 Araport11 exon 6788 7069 . - . ID=AT1G01020.5:exon:1;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6788 6914 . - . ID=AT1G01020.5:five_prime_UTR;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7157 7232 . - . ID=AT1G01020.5:exon:2;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7384 7450 . - . ID=AT1G01020.5:exon:3;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7564 7649 . - . ID=AT1G01020.5:exon:4;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7762 7835 . - . ID=AT1G01020.5:exon:5;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7942 7987 . - . ID=AT1G01020.5:exon:6;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8236 8325 . - . ID=AT1G01020.5:exon:7;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8417 8464 . - . ID=AT1G01020.5:exon:8;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6914 8417 . - . ID=AT1G01020.5:five_prime_UTR;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8420 8464 . - . ID=AT1G01020.5:three_prime_UTR;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8594 9130 . - . ID=AT1G01020.5:exon:9;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8594 9130 . - . ID=AT1G01020.5:three_prime_UTR;Parent=AT1G01020.5;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 mRNA 6788 9130 . - . ID=AT1G01020.4;Parent=AT1G01020;Name=AT1G01020.4;gene_id=AT1G01020 +Chr1 Araport11 exon 6788 7069 . - . ID=AT1G01020.4:exon:1;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6788 6914 . - . ID=AT1G01020.4:five_prime_UTR;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7157 7232 . - . ID=AT1G01020.4:exon:2;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7384 7450 . - . ID=AT1G01020.4:exon:3;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7564 7649 . - . ID=AT1G01020.4:exon:4;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7762 7835 . - . ID=AT1G01020.4:exon:5;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7942 7987 . - . ID=AT1G01020.4:exon:6;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8236 8464 . - . ID=AT1G01020.4:exon:7;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6914 8236 . - . ID=AT1G01020.4:five_prime_UTR;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8443 8464 . - . ID=AT1G01020.4:three_prime_UTR;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8594 9130 . - . ID=AT1G01020.4:exon:8;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8594 9130 . - . ID=AT1G01020.4:three_prime_UTR;Parent=AT1G01020.4;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 mRNA 6788 9130 . - . ID=AT1G01020.3;Parent=AT1G01020;Name=AT1G01020.3;gene_id=AT1G01020 +Chr1 Araport11 exon 6788 7069 . - . ID=AT1G01020.3:exon:1;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6788 6914 . - . ID=AT1G01020.3:five_prime_UTR;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7157 7232 . - . ID=AT1G01020.3:exon:2;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7384 7450 . - . ID=AT1G01020.3:exon:3;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7564 7649 . - . ID=AT1G01020.3:exon:4;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7762 7835 . - . ID=AT1G01020.3:exon:5;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7942 7987 . - . ID=AT1G01020.3:exon:6;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8236 8464 . - . ID=AT1G01020.3:exon:7;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6914 8236 . - . ID=AT1G01020.3:five_prime_UTR;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8443 8464 . - . ID=AT1G01020.3:three_prime_UTR;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8571 9130 . - . ID=AT1G01020.3:exon:8;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8571 9130 . - . ID=AT1G01020.3:three_prime_UTR;Parent=AT1G01020.3;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 mRNA 6788 9130 . - . ID=AT1G01020.1;Parent=AT1G01020;Name=AT1G01020.1;gene_id=AT1G01020 +Chr1 Araport11 exon 6788 7069 . - . ID=AT1G01020.1:exon:1;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6788 6914 . - . ID=AT1G01020.1:five_prime_UTR;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7157 7232 . - . ID=AT1G01020.1:exon:2;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7384 7450 . - . ID=AT1G01020.1:exon:3;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7564 7649 . - . ID=AT1G01020.1:exon:4;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7762 7835 . - . ID=AT1G01020.1:exon:5;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7942 7987 . - . ID=AT1G01020.1:exon:6;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8236 8325 . - . ID=AT1G01020.1:exon:7;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8417 8464 . - . ID=AT1G01020.1:exon:8;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8571 9130 . - . ID=AT1G01020.1:exon:9;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6914 8571 . - . ID=AT1G01020.1:five_prime_UTR;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8667 9130 . - . ID=AT1G01020.1:three_prime_UTR;Parent=AT1G01020.1;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 mRNA 6788 8737 . - . ID=AT1G01020.2;Parent=AT1G01020;Name=AT1G01020.2;gene_id=AT1G01020 +Chr1 Araport11 exon 6788 7069 . - . ID=AT1G01020.2:exon:1;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6788 7069 . - . ID=AT1G01020.2:five_prime_UTR;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7157 7450 . - . ID=AT1G01020.2:exon:2;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 7157 7314 . - . ID=AT1G01020.2:five_prime_UTR;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7564 7649 . - . ID=AT1G01020.2:exon:3;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7762 7835 . - . ID=AT1G01020.2:exon:4;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7942 7987 . - . ID=AT1G01020.2:exon:5;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8236 8325 . - . ID=AT1G01020.2:exon:6;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8417 8464 . - . ID=AT1G01020.2:exon:7;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8571 8737 . - . ID=AT1G01020.2:exon:8;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 7314 8571 . - . ID=AT1G01020.2:five_prime_UTR;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8667 8737 . - . ID=AT1G01020.2:three_prime_UTR;Parent=AT1G01020.2;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 mRNA 6788 8737 . - . ID=AT1G01020.6;Parent=AT1G01020;Name=AT1G01020.6;gene_id=AT1G01020 +Chr1 Araport11 exon 6788 7069 . - . ID=AT1G01020.6:exon:1;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 6788 7069 . - . ID=AT1G01020.6:five_prime_UTR;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7157 7450 . - . ID=AT1G01020.6:exon:2;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 7157 7314 . - . ID=AT1G01020.6:five_prime_UTR;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 7564 7649 . - . ID=AT1G01020.6:exon:3;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8236 8325 . - . ID=AT1G01020.6:exon:4;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8417 8464 . - . ID=AT1G01020.6:exon:5;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 five_prime_UTR 7314 8417 . - . ID=AT1G01020.6:five_prime_UTR;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8420 8464 . - . ID=AT1G01020.6:three_prime_UTR;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 exon 8594 8737 . - . ID=AT1G01020.6:exon:6;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 three_prime_UTR 8594 8737 . - . ID=AT1G01020.6:three_prime_UTR;Parent=AT1G01020.6;Name=AT1G01020;gene_id=AT1G01020 +Chr1 Araport11 gene 11649 13714 . - . ID=AT1G01030;symbol=NGA3;full_name=NGATHA3;tid=AT1G01030.1;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 mRNA 11649 13714 . - . ID=AT1G01030.1;Parent=AT1G01030;Name=AT1G01030.1;gene_id=AT1G01030 +Chr1 Araport11 exon 11649 13173 . - . ID=AT1G01030.1:exon:1;Parent=AT1G01030.1;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 five_prime_UTR 11649 11863 . - . ID=AT1G01030.1:five_prime_UTR;Parent=AT1G01030.1;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 three_prime_UTR 12941 13173 . - . ID=AT1G01030.1:three_prime_UTR;Parent=AT1G01030.1;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 exon 13335 13714 . - . ID=AT1G01030.1:exon:2;Parent=AT1G01030.1;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 three_prime_UTR 13335 13714 . - . ID=AT1G01030.1:three_prime_UTR;Parent=AT1G01030.1;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 mRNA 11649 13714 . - . ID=AT1G01030.2;Parent=AT1G01030;Name=AT1G01030.2;gene_id=AT1G01030 +Chr1 Araport11 exon 11649 12354 . - . ID=AT1G01030.2:exon:1;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 five_prime_UTR 11649 11863 . - . ID=AT1G01030.2:five_prime_UTR;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 exon 12424 13173 . - . ID=AT1G01030.2:exon:2;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 five_prime_UTR 11863 12424 . - . ID=AT1G01030.2:five_prime_UTR;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 three_prime_UTR 12941 13173 . - . ID=AT1G01030.2:three_prime_UTR;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 exon 13335 13714 . - . ID=AT1G01030.2:exon:3;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +Chr1 Araport11 three_prime_UTR 13335 13714 . - . ID=AT1G01030.2:three_prime_UTR;Parent=AT1G01030.2;Name=AT1G01030;gene_id=AT1G01030 +