Mercurial > repos > ifb-elixirfr > abromics_extractor_summarize

comparison test-data/bakta/bakta_summary.txt @ 0:eb95c9ca5c60 draft

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planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
author ifb-elixirfr
date Mon, 24 Jul 2023 14:57:00 +0000
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1 Sequence(s):
2 Length: 3027634
3 Count: 100
4 GC: 37.3
5 N50: 99915
6 N ratio: 0.0
7 coding density: 87.7
8
9 Annotation:
10 tRNAs: 59
11 tmRNAs: 1
12 rRNAs: 6
13 ncRNAs: 36
14 ncRNA regions: 44
15 CRISPR arrays: 1
16 CDSs: 2887
17 pseudogenes: 8
18 hypotheticals: 302
19 signal peptides: 0
20 sORFs: 4
21 gaps: 0
22 oriCs: 4
23 oriVs: 0
24 oriTs: 0
25
26 Bakta:
27 Software: v1.6.1
28 Database: v4.0
29 DOI: 10.1099/mgen.0.000685
30 URL: github.com/oschwengers/bakta