Mercurial > repos > ifb-elixirfr > abromics_extractor_summarize

annotate test-data/bakta/bakta_summary.txt @ 0:eb95c9ca5c60 draft

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planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
author ifb-elixirfr
date Mon, 24 Jul 2023 14:57:00 +0000
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1 Sequence(s):
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2 Length: 3027634
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3 Count: 100
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4 GC: 37.3
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5 N50: 99915
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6 N ratio: 0.0
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7 coding density: 87.7
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8
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9 Annotation:
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10 tRNAs: 59
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11 tmRNAs: 1
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12 rRNAs: 6
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13 ncRNAs: 36
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14 ncRNA regions: 44
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15 CRISPR arrays: 1
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16 CDSs: 2887
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17 pseudogenes: 8
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18 hypotheticals: 302
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19 signal peptides: 0
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20 sORFs: 4
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21 gaps: 0
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22 oriCs: 4
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23 oriVs: 0
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24 oriTs: 0
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25
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26 Bakta:
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27 Software: v1.6.1
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28 Database: v4.0
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29 DOI: 10.1099/mgen.0.000685
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30 URL: github.com/oschwengers/bakta