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view test-data/integronfinder2/results.integrons @ 1:39137acb0806 draft

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planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools/-/tree/galaxy_dev/abromics_galaxy_json_extractor?ref_type=heads commit 8db8564ece9607d015d3730e06854416011ec05c
author ifb-elixirfr
date Mon, 28 Aug 2023 15:05:54 +0000
parents eb95c9ca5c60
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# cmd: integron_finder --cpu 4 --local-max --eagle-eyes --promoter-attI --pdf --gbk --keep-tmp --outdir /storage/scratch/piemari/60579123/integronfinder/integronfinder_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579123/integronfinder/10_Enterococcus_faecalis_S17_L001.fasta
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	contig00017	contig00017_42	41235	41546	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_01	contig00017	contig00017_43	41543	42391	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_01	contig00017	attc_001	41600	41701	-1	0.15	attC	attC	attc_4	CALIN	No	NA	lin
integron_01	contig00017	contig00017_44	42419	43705	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_01	contig00017	contig00017_45	43702	45213	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_01	contig00017	attc_002	44054	44100	-1	0.095	attC	attC	attc_4	CALIN	No	2353.0	lin