comparison abromics_galaxy_json_extractor.xml @ 8:fe7c0554432c draft

planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit 11da23216ea90c4177af3baa9fe2984645af44fc

7:3afb9462e149

                <expand macro="element_assert" name="bracken_3_output" text="Staphylococcus_aureus"/>
                <expand macro="element_assert" name="fastp_4_output" text="705053822"/>
                <expand macro="element_assert" name="integronfinder2_5_output" text="2353.0"/>
                <expand macro="element_assert" name="isescan_6_output" text="IS200/IS605"/>
                <expand macro="element_assert" name="kraken2_7_output" text="Enterococcus_faecalis_ATCC_29212"/>
                <expand macro="element_assert" name="plasmidfinder_8_output" text="repUS40_1_repB"/>
                <expand macro="element_assert" name="quast_9_output" text="2944723"/>
                <expand macro="element_assert" name="recentrifuge_10_output" text="6.4917947578"/>
                <expand macro="element_assert" name="refseqmasher_11_output" text="GCF_000519925.1"/>
                <expand macro="element_assert" name="shovill_12_output" text="436224"/>
                <expand macro="element_assert" name="staramr_13_output" text="10_Enterococcus_faecalis_S17_L001"/>

        | Tools          | Version        | Default input file| Optional files                                             |
        +================+================+===================+============================================================+
        | Abricate       | 1.0.1          |  output.tsv       |                                                            |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Bakta          | 1.7.0          |  output.json      | protein.faa, nucleotide.fna, annotation.gff3, summary.txt  |
        +----------------+----------------+-------------------+------------------------------------------------------------+        
        | Bandage        | 0.8.1          |  info.txt         |                                                            |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Bracken        | 2.8            |  output.tsv       | taxonomy.tsv                                               |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Fastp          | 0.23.2         |  output.json      |                                                            |

8:fe7c0554432c

                <expand macro="element_assert" name="bracken_3_output" text="Staphylococcus_aureus"/>
                <expand macro="element_assert" name="fastp_4_output" text="705053822"/>
                <expand macro="element_assert" name="integronfinder2_5_output" text="2353.0"/>
                <expand macro="element_assert" name="isescan_6_output" text="IS200/IS605"/>
                <expand macro="element_assert" name="kraken2_7_output" text="Enterococcus_faecalis_ATCC_29212"/>
                <expand macro="element_assert" name="plasmidfinder_8_output" text="repUS12"/>
                <expand macro="element_assert" name="quast_9_output" text="2944723"/>
                <expand macro="element_assert" name="recentrifuge_10_output" text="6.4917947578"/>
                <expand macro="element_assert" name="refseqmasher_11_output" text="GCF_000519925.1"/>
                <expand macro="element_assert" name="shovill_12_output" text="436224"/>
                <expand macro="element_assert" name="staramr_13_output" text="10_Enterococcus_faecalis_S17_L001"/>

        | Tools          | Version        | Default input file| Optional files                                             |
        +================+================+===================+============================================================+
        | Abricate       | 1.0.1          |  output.tsv       |                                                            |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Bakta          | 1.7.0          |  output.json      | protein.faa, nucleotide.fna, annotation.gff3, summary.txt  |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Bandage        | 0.8.1          |  info.txt         |                                                            |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Bracken        | 2.8            |  output.tsv       | taxonomy.tsv                                               |
        +----------------+----------------+-------------------+------------------------------------------------------------+
        | Fastp          | 0.23.2         |  output.json      |                                                            |