Mercurial > repos > ifb-elixirfr > abromics_galaxy_json_extractor

diff abromics_galaxy_json_extractor.xml @ 8:fe7c0554432c draft

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planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit 11da23216ea90c4177af3baa9fe2984645af44fc
author ifb-elixirfr
date Tue, 23 Jan 2024 15:41:18 +0000
parents 089c8dda0782
children bdd3a5ca3c38
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line diff
--- a/abromics_galaxy_json_extractor.xml	Thu Oct 26 08:30:53 2023 +0000
+++ b/abromics_galaxy_json_extractor.xml	Tue Jan 23 15:41:18 2024 +0000
@@ -583,7 +583,7 @@
                 <expand macro="element_assert" name="integronfinder2_5_output" text="2353.0"/>
                 <expand macro="element_assert" name="isescan_6_output" text="IS200/IS605"/>
                 <expand macro="element_assert" name="kraken2_7_output" text="Enterococcus_faecalis_ATCC_29212"/>
-                <expand macro="element_assert" name="plasmidfinder_8_output" text="repUS40_1_repB"/>
+                <expand macro="element_assert" name="plasmidfinder_8_output" text="repUS12"/>
                 <expand macro="element_assert" name="quast_9_output" text="2944723"/>
                 <expand macro="element_assert" name="recentrifuge_10_output" text="6.4917947578"/>
                 <expand macro="element_assert" name="refseqmasher_11_output" text="GCF_000519925.1"/>
@@ -604,7 +604,7 @@
         | Abricate       | 1.0.1          |  output.tsv       |                                                            |
         +----------------+----------------+-------------------+------------------------------------------------------------+
         | Bakta          | 1.7.0          |  output.json      | protein.faa, nucleotide.fna, annotation.gff3, summary.txt  |
-        +----------------+----------------+-------------------+------------------------------------------------------------+        
+        +----------------+----------------+-------------------+------------------------------------------------------------+
         | Bandage        | 0.8.1          |  info.txt         |                                                            |
         +----------------+----------------+-------------------+------------------------------------------------------------+
         | Bracken        | 2.8            |  output.tsv       | taxonomy.tsv                                               |