changeset 3:1861b7f49aed draft

planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit 12dee18b8a3e5f84bb774bc170895cd3245c57d0
author ifb-elixirfr
date Wed, 13 Sep 2023 12:58:42 +0000
parents 857426567aca
children f390341fa01b
files abromics_galaxy_json_extractor.xml macro.xml
diffstat 2 files changed, 4 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/abromics_galaxy_json_extractor.xml	Wed Aug 30 12:53:46 2023 +0000
+++ b/abromics_galaxy_json_extractor.xml	Wed Sep 13 12:58:42 2023 +0000
@@ -186,7 +186,6 @@
             &&
         #end if
     #end for
-        && ls abromics_extracted_folder
         ]]>
     </command>
     <inputs>
@@ -609,7 +608,7 @@
         | Refseqmasher   | 0.1.2          |  output.tsv       |                                                            |
         | Shovill        | 1.1.0          |  contigs.fasta    | alignment.bam, contigs.gfa                                 |
         | Staramr        | 0.9.1          |  resfinder.tsv    | mlst.tsv, pointfinder.tsv, plasmidfinder.tsv, settings.tsv |
-        | tabular_file   |  0             |    output.tsv     | no optional files                                          |
+        | tabular_file   |  0             |  output.tsv       | no optional files                                          |
 
         ** Options **
         You can add a tool version and a database version for related tools.
--- a/macro.xml	Wed Aug 30 12:53:46 2023 +0000
+++ b/macro.xml	Wed Sep 13 12:58:42 2023 +0000
@@ -1,7 +1,7 @@
 
 <macros>
-    <token name="@TOOL_VERSION@">0.7</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">0.8</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">21.05</token>
     <xml name="version_command">
         <version_command><![CDATA[abromics_extract --version]]></version_command>
@@ -24,7 +24,7 @@
     </xml>
     <xml name="citations">
         <citations>
-            <citation type="doi">10.5281/zenodo.6787039</citation>
+            <citation type="doi">10.5281/zenodo.8282656</citation>
         </citations>
     </xml>
     <xml name="element_assert" token_name="" token_text="">