Mercurial > repos > imgteam > 2d_auto_threshold
annotate test-data/input/README.md @ 10:2ee04d2ebdcf draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
| author | imgteam |
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| date | Sat, 03 Jan 2026 14:43:10 +0000 |
| parents | |
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| rev | line source |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
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1 # Overview of the test images |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
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2 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
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3 ## `input5.jpg`: |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
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4 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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5 - axes: `YX` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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6 - resolution: `(10, 10, 3)` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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7 - dtype: `uint8` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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8 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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9 ## `input8_zyx.zarr`: |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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10 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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11 - axes: `ZYX` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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12 - resolution: `(2, 100, 100)` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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13 - dtype: `float64` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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14 - metadata: |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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15 - resolution: `(1.0, 1.0)` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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16 - z-spacing: `1.0` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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17 - unit: `um` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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18 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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19 ## `rgb.png`: |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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20 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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21 - axes: `YXC` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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22 - resolution: `(6, 6, 3)` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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23 - dtype: `uint8` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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24 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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25 ## `sample.tiff`: |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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26 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
|
27 - axes: `YX` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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28 - resolution: `(265, 329)` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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29 - dtype: `uint8` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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30 - metadata: *unknown* |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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31 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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32 ## `sample2.tiff`: |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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33 |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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34 - axes: `YX` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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35 - resolution: `(96, 97)` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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36 - dtype: `uint8` |
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2ee04d2ebdcf
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 71f7ecabba78de48147d4a5e6ea380b6b70b16e8
imgteam
parents:
diff
changeset
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37 - metadata: *unknown* |
