Mercurial > repos > imgteam > 2d_simple_filter
comparison filter.xml @ 0:f264ae82f735 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_simple_filter/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
---|---|
date | Sat, 09 Feb 2019 14:29:13 -0500 |
parents | |
children | dba87c4b32d3 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:f264ae82f735 |
---|---|
1 <tool id="ip_filter_standard" name="Filter Image" version="0.0.2"> | |
2 <description>applies a standard filter to an image</description> | |
3 <requirements> | |
4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
5 <requirement type="package" version="1.15.4">numpy</requirement> | |
6 <requirement type="package" version="5.3.0">pillow</requirement> | |
7 <requirement type="package" version="0.15.1">tifffile</requirement> | |
8 </requirements> | |
9 <command detect_errors="aggressive"> | |
10 <![CDATA[ | |
11 python '$__tool_directory__/filter_image.py' '$input' '$output' $filter_type $radius | |
12 ]]> | |
13 </command> | |
14 <inputs> | |
15 <param name="filter_type" type="select" label="Image type"> | |
16 <option value="median" selected="True">Median</option> | |
17 <option value="gaussian">Gaussian Blur</option> | |
18 <option value="prewitt">Prewitt</option> | |
19 <option value="sobel">Sobel</option> | |
20 <option value="scharr">Scharr</option> | |
21 </param> | |
22 <param name="radius" type="integer" value="3" label="Radius/Sigma" /> | |
23 <param name="input" type="data" format="tiff" label="Source file" /> | |
24 </inputs> | |
25 <outputs> | |
26 <data format="tiff" name="output" /> | |
27 </outputs> | |
28 <tests> | |
29 <test> | |
30 <param name="input" value="sample.tif" /> | |
31 <output name="output" value="res.tif" ftype="tiff" compare="sim_size"/> | |
32 <param name="filter_type" value="prewitt" /> | |
33 <param name="radius" value="4" /> | |
34 </test> | |
35 </tests> | |
36 <help> | |
37 **What it does** | |
38 | |
39 Applies a standard filter to an image. | |
40 </help> | |
41 <citations> | |
42 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
43 </citations> | |
44 </tool> |