diff filter.xml @ 0:f264ae82f735 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_simple_filter/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/filter.xml	Sat Feb 09 14:29:13 2019 -0500
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+<tool id="ip_filter_standard" name="Filter Image" version="0.0.2">
+    <description>applies a standard filter to an image</description>
+    <requirements>
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+        <requirement type="package" version="5.3.0">pillow</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
+    </requirements>
+    <command detect_errors="aggressive">
+      <![CDATA[
+        python '$__tool_directory__/filter_image.py' '$input' '$output' $filter_type $radius
+      ]]>
+    </command>
+    <inputs>
+        <param name="filter_type" type="select" label="Image type">
+          <option value="median" selected="True">Median</option>
+          <option value="gaussian">Gaussian Blur</option>
+          <option value="prewitt">Prewitt</option>
+          <option value="sobel">Sobel</option>
+          <option value="scharr">Scharr</option>
+        </param>
+        <param name="radius" type="integer" value="3" label="Radius/Sigma" />
+        <param name="input" type="data" format="tiff" label="Source file" />
+    </inputs>
+    <outputs>
+       <data format="tiff" name="output" />
+    </outputs>
+    <tests>
+      <test>
+        <param name="input" value="sample.tif" />
+        <output name="output" value="res.tif" ftype="tiff" compare="sim_size"/>
+        <param name="filter_type" value="prewitt" />
+        <param name="radius" value="4" />
+      </test>
+    </tests>
+    <help>
+    **What it does**
+
+    Applies a standard filter to an image.
+    </help>
+    <citations>
+       <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>