comparison coordinates_of_roi.xml @ 4:00175f4a2bbb draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/coordinates_of_roi/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:10:52 +0000
parents 02a686fc1654
children
comparison
equal deleted inserted replaced
3:02a686fc1654 4:00175f4a2bbb
1 <tool id="ip_coordinates_of_roi" name="Coordinates of ROI" version="0.0.4"> 1 <tool id="ip_coordinates_of_roi" name="Convert binary image to points (point coordinates)" version="0.0.4-2">
2 <description></description> 2 <description></description>
3 <edam_operations>
4 <edam_operation>operation_3443</edam_operation>
5 </edam_operations>
6 <xrefs>
7 <xref type="bio.tools">galaxy_image_analysis</xref>
8 </xrefs>
3 <requirements> 9 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 10 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="0.23.4">pandas</requirement> 11 <requirement type="package" version="0.23.4">pandas</requirement>
12 <requirement type="package" version="0.15.1">tifffile</requirement>
6 </requirements> 13 </requirements>
7 <command detect_errors="aggressive"> 14 <command detect_errors="aggressive">
8 <![CDATA[ 15 <![CDATA[
9 python '$__tool_directory__/coordinates_of_roi.py' 16 python '$__tool_directory__/coordinates_of_roi.py'
10 '$im' 17 '$im'
11 '$pixel_table' 18 '$pixel_table'
12 $white_obj 19 $white_obj
13 --threshold $threshold 20 --threshold $threshold
14 ]]> 21 ]]>
15 </command> 22 </command>
16 <inputs> 23 <inputs>