Mercurial > repos > imgteam > coordinates_of_roi

diff coordinates_of_roi.xml @ 4:00175f4a2bbb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/coordinates_of_roi/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:10:52 +0000
parents 02a686fc1654
children
line wrap: on
line diff
--- a/coordinates_of_roi.xml	Mon Mar 25 11:15:39 2019 -0400
+++ b/coordinates_of_roi.xml	Mon Nov 13 22:10:52 2023 +0000
@@ -1,14 +1,21 @@
-<tool id="ip_coordinates_of_roi" name="Coordinates of ROI" version="0.0.4">
+<tool id="ip_coordinates_of_roi" name="Convert binary image to points (point coordinates)" version="0.0.4-2">
     <description></description>
+    <edam_operations>
+        <edam_operation>operation_3443</edam_operation>
+    </edam_operations>
+    <xrefs>
+        <xref type="bio.tools">galaxy_image_analysis</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
         <requirement type="package" version="0.23.4">pandas</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
     </requirements>
     <command detect_errors="aggressive">
         <![CDATA[
             python '$__tool_directory__/coordinates_of_roi.py'
             '$im'
-            '$pixel_table'
+            '$pixel_table' 
             $white_obj
             --threshold $threshold
         ]]>