Mercurial > repos > imgteam > curve_fitting

diff curve_fitting.py @ 5:e0af18405e37 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/curve_fitting/ commit cd63bc5e6eb7254111012209fac9154569355f20
author imgteam
date Tue, 19 Jul 2022 08:51:41 +0000
parents 8bf2c507af3a
children
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--- a/curve_fitting.py	Sat Apr 09 12:46:19 2022 +0000
+++ b/curve_fitting.py	Tue Jul 19 08:51:41 2022 +0000
@@ -68,7 +68,7 @@
         seq = data_all[i][:, -1]
         seq_fit = seq.copy()
         idx_valid = ~np.isnan(seq)
-        seq_fit[idx_valid] = curve_fitting(seq[idx_valid], degree=2, penalty='abs')
+        seq_fit[idx_valid] = curve_fitting(seq[idx_valid], degree=degree, penalty=penalty)
         data_all[i] = np.concatenate((data_all[i], seq_fit.reshape(-1, 1)), axis=1)
         if alpha > 0:
             diff = np.concatenate((diff, seq_fit[idx_valid] - seq[idx_valid]))