Mercurial > repos > imgteam > curve_fitting
changeset 5:e0af18405e37 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/curve_fitting/ commit cd63bc5e6eb7254111012209fac9154569355f20
| author | imgteam |
|---|---|
| date | Tue, 19 Jul 2022 08:51:41 +0000 |
| parents | 004c57179c61 |
| children | 2dc244356765 |
| files | curve_fitting.py curve_fitting.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/curve_fitting.py Sat Apr 09 12:46:19 2022 +0000 +++ b/curve_fitting.py Tue Jul 19 08:51:41 2022 +0000 @@ -68,7 +68,7 @@ seq = data_all[i][:, -1] seq_fit = seq.copy() idx_valid = ~np.isnan(seq) - seq_fit[idx_valid] = curve_fitting(seq[idx_valid], degree=2, penalty='abs') + seq_fit[idx_valid] = curve_fitting(seq[idx_valid], degree=degree, penalty=penalty) data_all[i] = np.concatenate((data_all[i], seq_fit.reshape(-1, 1)), axis=1) if alpha > 0: diff = np.concatenate((diff, seq_fit[idx_valid] - seq[idx_valid]))
--- a/curve_fitting.xml Sat Apr 09 12:46:19 2022 +0000 +++ b/curve_fitting.xml Tue Jul 19 08:51:41 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="ip_curve_fitting" name="Curve Fitting" version="0.0.2" profile="20.05"> +<tool id="ip_curve_fitting" name="Curve Fitting" version="0.0.3" profile="20.05"> <description>to data points using (1st- or 2nd-degree) polynomial function</description> <requirements> <requirement type="package" version="1.20.2">numpy</requirement> @@ -11,9 +11,9 @@ python '$__tool_directory__/curve_fitting.py' '$fn_in' ./output.xlsx - '$degree' - '$penalty' - '$alpha' + $degree + $penalty + $alpha ]]> </command> <inputs>