annotate imagej2_create_image_jython_script.py @ 2:7121957d0bbf draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5

import sys

from ij import IJ

# Fiji Jython interpreter implements Python 2.5 which does not
# provide support for argparse.
title = sys.argv[-6]
width = int(sys.argv[-5])
height = int(sys.argv[-4])
depth = int(sys.argv[-3])
type = sys.argv[-2].replace("_", " ")
tmp_image_path = sys.argv[-1]

imp = IJ.newImage(title, type, width, height, depth)
IJ.save(imp, "%s" % tmp_image_path)