Mercurial > repos > imgteam > landmark_registration_ls
comparison landmark_registration_ls.xml @ 0:2f36165c49fb draft
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/landmark_registration_ls/ commit abd8b0b42f6a700d61c7b042dbf5e5a291b148a3"
author | imgteam |
---|---|
date | Tue, 29 Dec 2020 12:10:53 +0000 |
parents | |
children | 69db8c7d4244 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:2f36165c49fb |
---|---|
1 <tool id="ip_landmark_registration_ls" name="Landmark Registration" version="0.0.1"> | |
2 <description>using least squares</description> | |
3 <requirements> | |
4 <requirement type="package" version="1.2.1">scipy</requirement> | |
5 <requirement type="package" version="0.23.4">pandas</requirement> | |
6 <requirement type="package" version="1.15.2">numpy</requirement> | |
7 </requirements> | |
8 <command><![CDATA[ | |
9 python '$__tool_directory__/landmark_registration_ls.py' | |
10 '$fn_pts1' | |
11 '$fn_pts2' | |
12 '$fn_tmat' | |
13 ]]></command> | |
14 <inputs> | |
15 <param name="fn_pts1" type="data" format="tabular" label="Path to tab-separated file with src points" /> | |
16 <param name="fn_pts2" type="data" format="tabular" label="Path to tab-separated file with dst points" /> | |
17 </inputs> | |
18 <outputs> | |
19 <data format="tabular" name="fn_tmat" /> | |
20 </outputs> | |
21 <tests> | |
22 <test> | |
23 <param name="fn_pts1" value="points1.tsv"/> | |
24 <param name="fn_pts2" value="points2.tsv"/> | |
25 <output name="fn_tmat" value="tmat.tsv" ftype="tabular" compare="diff" lines_diff="6"/> | |
26 </test> | |
27 </tests> | |
28 <help> | |
29 **What it does** | |
30 | |
31 This tool estimates the (affine) transformation matrix using least squares given two sets of 2d coordinates of landmarks. | |
32 </help> | |
33 </tool> |