Mercurial > repos > imgteam > overlay_moving_and_fixed_image
comparison overlay_moving_and_fixed_image.xml @ 0:165a9330fc90 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/overlay_moving_and_fixed_image/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:39:40 -0500 |
parents | |
children | bc324ec66719 |
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1 <tool id="ip_viz_overlay_moving_and_fixed_image" name="Overlay" version="0.0.1"> | |
2 <description>moving and fixed image</description> | |
3 <requirements> | |
4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
5 <requirement type="package" version="0.23.4">pandas</requirement> | |
6 <requirement type="package" version="1.15.4">numpy</requirement> | |
7 <requirement type="package" version="1.1.0">scipy</requirement> | |
8 <requirement type="package" version="5.3.0">pillow</requirement> | |
9 </requirements> | |
10 <command><![CDATA[ | |
11 python '$__tool_directory__/overlay_moving_and_fixed_image.py' | |
12 '$fixed_image' | |
13 '$moving_image' | |
14 '$warp_matrix' | |
15 '$overlay_out' | |
16 --factor $factor | |
17 $inverse_transform | |
18 ]]></command> | |
19 <inputs> | |
20 <param name="fixed_image" type= "data" format="png" label="Fixed image" /> | |
21 <param name="moving_image" type= "data" format="png" label="Moving image" /> | |
22 <param name="warp_matrix" type= "data" format="tabular" label="Warp Matrix" /> | |
23 <param name="factor" type="float" value="0.5" | |
24 label="Factor by which images are blended. 1.0 returns a copy of the fixed image, 0.0 returns a copy of the moving image."/> | |
25 <param name="inverse_transform" type="boolean" checked="false" truevalue="--inverse_transform" falsevalue="" | |
26 label="Set to Yes if inverse transformation should be displayed" /> | |
27 </inputs> | |
28 <outputs> | |
29 <data format="png" name="overlay_out" /> | |
30 </outputs> | |
31 <tests> | |
32 <test> | |
33 <param name="fixed_image" value="sample1.png" /> | |
34 <param name="moving_image" value="sample2.png" /> | |
35 <param name="warp_matrix" value="warp_matrix.tsv" /> | |
36 <param name="factor" value="0.75" /> | |
37 <output name="overlay_out" value="out.png" ftype="png" compare="sim_size" /> | |
38 </test> | |
39 </tests> | |
40 <help> | |
41 **What it does** | |
42 | |
43 This tool performs an overlay of two images of which one was transformed to match the other. | |
44 </help> | |
45 <citations> | |
46 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
47 </citations> | |
48 </tool> |