diff overlay_moving_and_fixed_image.xml @ 0:165a9330fc90 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/overlay_moving_and_fixed_image/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/overlay_moving_and_fixed_image.xml	Sat Feb 09 14:39:40 2019 -0500
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+<tool id="ip_viz_overlay_moving_and_fixed_image" name="Overlay" version="0.0.1">
+    <description>moving and fixed image</description>
+    <requirements>
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="0.23.4">pandas</requirement>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+        <requirement type="package" version="1.1.0">scipy</requirement>
+        <requirement type="package" version="5.3.0">pillow</requirement>
+    </requirements>
+    <command><![CDATA[
+         python '$__tool_directory__/overlay_moving_and_fixed_image.py'
+             '$fixed_image'
+             '$moving_image'
+             '$warp_matrix'
+             '$overlay_out'
+             --factor $factor
+             $inverse_transform
+    ]]></command>
+    <inputs>
+        <param name="fixed_image" type= "data" format="png" label="Fixed image" />
+        <param name="moving_image" type= "data" format="png" label="Moving image" />
+        <param name="warp_matrix" type= "data" format="tabular" label="Warp Matrix" />
+        <param name="factor" type="float" value="0.5"
+            label="Factor by which images are blended. 1.0 returns a copy of the fixed image, 0.0 returns a copy of the moving image."/>
+        <param name="inverse_transform" type="boolean" checked="false" truevalue="--inverse_transform" falsevalue=""
+            label="Set to Yes if inverse transformation should be displayed" />
+    </inputs>
+    <outputs>
+       <data format="png" name="overlay_out" />
+    </outputs>
+    <tests>
+      <test>
+        <param name="fixed_image" value="sample1.png" />
+        <param name="moving_image" value="sample2.png" />
+        <param name="warp_matrix" value="warp_matrix.tsv" />
+        <param name="factor" value="0.75" />
+        <output name="overlay_out" value="out.png" ftype="png" compare="sim_size" />
+      </test>
+    </tests>
+    <help>
+    **What it does**
+
+    This tool performs an overlay of two images of which one was transformed to match the other.
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>