comparison projective_transformation.xml @ 0:17f5d0c3f8a3 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:44:40 -0500
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1 <tool id="ip_projective_transformation" name="Projective Transformation" version="0.0.4">
2 <description>Projective Transformation</description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="0.23.4">pandas</requirement>
6 <requirement type="package" version="1.15.4">numpy</requirement>
7 <!--<requirement type="package" version="1.1.0">scipy</requirement>-->
8 </requirements>
9 <command>
10 <![CDATA[
11 python '$__tool_directory__/projective_transformation.py'
12 '$fixed_image'
13 '$moving_image'
14 '$warp_matrix'
15 ./out.png
16 ]]>
17 </command>
18 <inputs>
19 <param name="moving_image" type="data" format="png" label="Moving Image" />
20 <param name="fixed_image" type="data" format="png" label="Fixed Image" />
21 <param name="warp_matrix" type= "data" format="tabular" label="Warp Matrix" />
22 </inputs>
23 <outputs>
24 <data format="png" name="out" from_work_dir="out.png" />
25 </outputs>
26 <tests>
27 <test>
28 <param name="fixed_image" value="sample1.png"/>
29 <param name="moving_image" value="sample2.png"/>
30 <param name="warp_matrix" value="warp_matrix.tsv"/>
31 <output name="out" value="yam.png" ftype="png" compare="sim_size"/>
32 </test>
33 </tests>
34 <help>
35 **What it does**
36
37 This tool performs a projective transformation of the input (moving) image so that it fits the fixed image.
38 </help>
39 <citations>
40 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
41 </citations>
42 </tool>