Mercurial > repos > imgteam > projective_transformation
view projective_transformation.xml @ 2:1ffdb07020ee draft
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 40b2eeecc9e15be0b710f5e5195ac6f3b3b83c39"
author | imgteam |
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date | Fri, 14 Jan 2022 03:07:08 +0000 |
parents | 974cf4357707 |
children | be9a815e2240 |
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<tool id="ip_projective_transformation" name="Projective Transformation" version="0.1.0" profile="20.05"> <description>2D Projective Transformation</description> <requirements> <requirement type="package" version="0.18.1">scikit-image</requirement> <requirement type="package" version="1.2.4">pandas</requirement> <requirement type="package" version="1.20.2">numpy</requirement> <requirement type="package" version="1.6.2">scipy</requirement> <requirement type="package" version="2020.10.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/projective_transformation.py' '$fixed_image' '$moving_image' '$warp_matrix' ./out ]]> </command> <inputs> <param name="moving_image" type="data" format="tiff,png,jpg" label="Moving image (to be transformed)" /> <param name="fixed_image" type="data" format="tiff,png,jpg" label="Fixed image (the reference)" /> <param name="warp_matrix" type="data" format="tabular" label="Transformation matrix" /> </inputs> <outputs> <data format_source="moving_image" name="warped_image" from_work_dir="out" /> </outputs> <tests> <test> <param name="fixed_image" value="sample1.png"/> <param name="moving_image" value="sample2.png"/> <param name="warp_matrix" value="warp_matrix.tsv"/> <output name="warped_image" value="yam.png" ftype="png" compare="sim_size"/> </test> </tests> <help> **What it does** This tool performs a projective transformation of the moving image so that it fits the fixed image. Multi-channel and RGB images are supported. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>