diff split_labelmap.xml @ 0:597b7ef44b05 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/split_labelmaps/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/split_labelmap.xml	Sat Feb 09 14:47:34 2019 -0500
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+<tool id="ip_split_labelmap" name="Split Labelmap" version="0.1">
+    <description></description>
+    <requirements> 
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement> <!--not sure if this is required-->
+    </requirements>
+    <command> 
+        <![CDATA[
+        python '$__tool_directory__/split_labelmap.py' '$input' '$output'
+        ]]>
+    </command>
+    <inputs> 
+        <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image containing labels"/> 
+    </inputs>
+    <outputs>
+        <data name="output" format="tiff"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="sample_seg.tif"/>
+            <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
+        </test>
+    </tests>
+    <help>
+    **What it does**
+
+    Takes a labeled image and outputs a similar file where the labeled parts
+    of the image that touch (or overlap) are separated by at least 1 pixel (at most 2).
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>