diff test-data/cfg.tsv @ 3:7fd8dba15bd3 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit fea6c8161c4b3e6394fe035b12b69b73e6fa7d75

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cfg.tsv	Thu Nov 16 12:29:41 2023 +0000
@@ -0,0 +1,78 @@
+Hyperparameter	Value
+c2f_region_analysis_min_norm_energy_improvement	0.1
+c2f_region_analysis_max_atom_norm_energy	0.05
+c2f_region_analysis_max_cluster_marker_irregularity	0.2
+dsm_AF_alpha	0.0005
+global_energy_minimization_AF_beta	0.66
+postprocess_mask_max_distance	1
+postprocess_mask_stdamp	2.0
+postprocess_max_norm_energy	0.2
+postprocess_min_contrast	1.35
+postprocess_min_object_radius	0.0
+AF_scale	
+preprocess/AF_sigma2	1.0
+preprocess/sigma2	65.05382386916237
+preprocess/enabled	True
+preprocess/sigma1	1.4142135623730951
+preprocess/offset_clip	3
+preprocess/lower_clip_mean	False
+dsm/AF_alpha	0.0005
+dsm/alpha	2.116
+dsm/AF_smooth_amount	0.2
+dsm/smooth_amount	13
+dsm/AF_smooth_subsample	0.4
+dsm/smooth_subsample	26
+dsm/AF_background_margin	0.4
+dsm/background_margin	26
+dsm/enabled	True
+dsm/cachesize	1
+dsm/cachetest	
+dsm/sparsity_tol	0
+dsm/init	elliptical
+dsm/epsilon	1.0
+dsm/scale	1000
+dsm/gaussian_shape_multiplier	2
+dsm/smooth_mat_dtype	float32
+dsm/smooth_mat_max_allocations	inf
+dsm/cp_timeout	300
+c2f-region-analysis/AF_min_atom_radius	0.33
+c2f-region-analysis/min_atom_radius	30
+c2f-region-analysis/enabled	True
+c2f-region-analysis/seed_connectivity	8
+c2f-region-analysis/max_atom_norm_energy	0.05
+c2f-region-analysis/min_norm_energy_improvement	0.1
+c2f-region-analysis/max_cluster_marker_irregularity	0.2
+global-energy-minimization/AF_beta	0.66
+global-energy-minimization/beta	2793.1200000000003
+global-energy-minimization/AF_max_seed_distance	inf
+global-energy-minimization/max_seed_distance	inf
+global-energy-minimization/enabled	True
+global-energy-minimization/strict	True
+global-energy-minimization/max_iter	5
+global-energy-minimization/gamma	0.8
+global-energy-minimization/max_work_amount	1000000
+postprocess/AF_min_object_radius	0.0
+postprocess/min_object_radius	0.0
+postprocess/AF_max_object_radius	inf
+postprocess/max_object_radius	inf
+postprocess/AF_min_glare_radius	inf
+postprocess/min_glare_radius	inf
+postprocess/enabled	True
+postprocess/max_norm_energy	0.2
+postprocess/discard_image_boundary	False
+postprocess/min_boundary_obj_radius	0
+postprocess/max_eccentricity	0.99
+postprocess/max_boundary_eccentricity	inf
+postprocess/exterior_scale	5
+postprocess/exterior_offset	5
+postprocess/min_contrast	1.35
+postprocess/contrast_epsilon	0.0001
+postprocess/mask_stdamp	2
+postprocess/mask_max_distance	1
+postprocess/mask_smoothness	3
+postprocess/fill_holes	True
+postprocess/glare_detection_smoothness	3
+postprocess/glare_detection_num_layers	5
+postprocess/glare_detection_min_layer	0.5
+postprocess/min_boundary_glare_radius	inf
+histological	False