Mercurial > repos > imgteam > superdsm

view test-data/cfg.tsv @ 3:7fd8dba15bd3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit fea6c8161c4b3e6394fe035b12b69b73e6fa7d75
author imgteam
date Thu, 16 Nov 2023 12:29:41 +0000
parents
children dc5f72f6b1e9
line wrap: on
line source

Hyperparameter	Value
c2f_region_analysis_min_norm_energy_improvement	0.1
c2f_region_analysis_max_atom_norm_energy	0.05
c2f_region_analysis_max_cluster_marker_irregularity	0.2
dsm_AF_alpha	0.0005
global_energy_minimization_AF_beta	0.66
postprocess_mask_max_distance	1
postprocess_mask_stdamp	2.0
postprocess_max_norm_energy	0.2
postprocess_min_contrast	1.35
postprocess_min_object_radius	0.0
AF_scale	
preprocess/AF_sigma2	1.0
preprocess/sigma2	65.05382386916237
preprocess/enabled	True
preprocess/sigma1	1.4142135623730951
preprocess/offset_clip	3
preprocess/lower_clip_mean	False
dsm/AF_alpha	0.0005
dsm/alpha	2.116
dsm/AF_smooth_amount	0.2
dsm/smooth_amount	13
dsm/AF_smooth_subsample	0.4
dsm/smooth_subsample	26
dsm/AF_background_margin	0.4
dsm/background_margin	26
dsm/enabled	True
dsm/cachesize	1
dsm/cachetest	
dsm/sparsity_tol	0
dsm/init	elliptical
dsm/epsilon	1.0
dsm/scale	1000
dsm/gaussian_shape_multiplier	2
dsm/smooth_mat_dtype	float32
dsm/smooth_mat_max_allocations	inf
dsm/cp_timeout	300
c2f-region-analysis/AF_min_atom_radius	0.33
c2f-region-analysis/min_atom_radius	30
c2f-region-analysis/enabled	True
c2f-region-analysis/seed_connectivity	8
c2f-region-analysis/max_atom_norm_energy	0.05
c2f-region-analysis/min_norm_energy_improvement	0.1
c2f-region-analysis/max_cluster_marker_irregularity	0.2
global-energy-minimization/AF_beta	0.66
global-energy-minimization/beta	2793.1200000000003
global-energy-minimization/AF_max_seed_distance	inf
global-energy-minimization/max_seed_distance	inf
global-energy-minimization/enabled	True
global-energy-minimization/strict	True
global-energy-minimization/max_iter	5
global-energy-minimization/gamma	0.8
global-energy-minimization/max_work_amount	1000000
postprocess/AF_min_object_radius	0.0
postprocess/min_object_radius	0.0
postprocess/AF_max_object_radius	inf
postprocess/max_object_radius	inf
postprocess/AF_min_glare_radius	inf
postprocess/min_glare_radius	inf
postprocess/enabled	True
postprocess/max_norm_energy	0.2
postprocess/discard_image_boundary	False
postprocess/min_boundary_obj_radius	0
postprocess/max_eccentricity	0.99
postprocess/max_boundary_eccentricity	inf
postprocess/exterior_scale	5
postprocess/exterior_offset	5
postprocess/min_contrast	1.35
postprocess/contrast_epsilon	0.0001
postprocess/mask_stdamp	2
postprocess/mask_max_distance	1
postprocess/mask_smoothness	3
postprocess/fill_holes	True
postprocess/glare_detection_smoothness	3
postprocess/glare_detection_num_layers	5
postprocess/glare_detection_min_layer	0.5
postprocess/min_boundary_glare_radius	inf
histological	False