Mercurial > repos > immuneml > immuneml_tools

changeset 5:48569213d91c draft

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"planemo upload commit 49b58953ab7eec02a6917044be672ad9a65eab5c-dirty"
author immuneml
date Fri, 02 Jul 2021 11:04:53 +0000
parents 697bb1a18bc7
children 2d3dd9ff7e84
files README.md README.rst
diffstat 2 files changed, 12 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/README.md	Thu Jul 01 17:18:18 2021 +0000
+++ b/README.md	Fri Jul 02 11:04:53 2021 +0000
@@ -1,5 +1,6 @@
 # immuneml_tools
-Galaxy tool wrappers for immuneML.
+Galaxy tool wrappers for immuneML. The tools rely on immuneML version 2.0.1 or newer.
+
 https://immuneml.uio.no/
 
 ## Installation:
@@ -19,5 +20,5 @@
 ```
 The line has to be inside `<registration>` along with the other datatypes.
 
-### The immuneML conda package
-Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes. 
+### The immuneML package
+Conda installation of immuneML typically takes several minutes. There is general information about Galaxy's dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html
--- a/README.rst	Thu Jul 01 17:18:18 2021 +0000
+++ b/README.rst	Fri Jul 02 11:04:53 2021 +0000
@@ -1,5 +1,9 @@
-Installation
+Dependencies
 ============
+The tools rely on immuneML version 2.0.1 or newer. 
+
+Installation: datatype
+======================
 You will need to define a new datatype ``immuneml_receptors``, which is done as follows:
 
 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set
@@ -12,6 +16,6 @@
 ``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>``
 The line has to be inside ``<registration>`` along with the other datatypes.
 
-The immuneML conda package
-==========================
-Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes. 
+Installation: The immuneML package
+==================================
+Conda installation of immuneML typically takes several minutes. There is general information about Galaxy's dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html