Mercurial > repos > in_silico > cravat_annotate_mutations

diff cravat_annotate/cravat_annotate.xml @ 18:dd9181024296 draft

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author in_silico
date Tue, 12 Jun 2018 14:04:08 -0400
parents 152227fa7851
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cravat_annotate/cravat_annotate.xml	Tue Jun 12 14:04:08 2018 -0400
@@ -0,0 +1,25 @@
+<tool id="cravat_query" name="CRAVAT Query" version="1.0.0">
+    <description>Queries CRAVAT for cancer annotation</description>
+  <command interpreter="python">cravat_annotate.py $input $output</command>
+  
+  <inputs>
+    <param format="tabular" name="input" type="data" label="Source file"/>
+  </inputs>
+  
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input" value="input_call.txt"/>
+      <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/>
+    </test>
+  </tests>
+
+  <help>
+    This tool queries CRAVAT for cancer annotation.
+  </help>
+
+</tool>
+