Mercurial > repos > in_silico > cravat_score_and_annotate
diff cravat_submit/cravat_submit.xml @ 21:67a13940d0bf draft default tip
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author | in_silico |
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date | Thu, 16 Aug 2018 15:10:43 -0400 |
parents | 9985359fa7ff |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cravat_submit/cravat_submit.xml Thu Aug 16 15:10:43 2018 -0400 @@ -0,0 +1,34 @@ +<tool id="cravat_submit" name="CRAVAT Submit, Check, and Retrieve" version="0.1.0"> + <description>Submits, checks for, and retrieves data for cancer annotation</description> + <command interpreter="python">cravat_submit.py --input $input --output $output --analysis $dropdown</command> + + + <inputs> + + <param format="tabular" name="input" type="data" label="Source file"> </param> + <param format="tabular" name="dropdown" type="select" label="Analysis Program"> + <option value="None">None</option> + <option value="VEST">VEST</option> + <option value="CHASM">CHASM</option> + <option value="VEST;CHASM">VEST and CHASM</option> + </param> + + + </inputs> + + <outputs> + <data format="tabular" name="output" /> + </outputs> + + <tests> + <test> + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> + </test> + </tests> + + <help> + This tool submits, checks for, and retrieves data for cancer annotation. + </help> + +</tool>