Mercurial > repos > insilico-bob > ngchm_dependencies
comparison tool_dependencies.xml @ 3:715e125409e2 draft
Uploaded
| author | insilico-bob |
|---|---|
| date | Fri, 30 Dec 2016 12:44:38 -0500 |
| parents | db0f44260207 |
| children | d3d47c77ec79 |
comparison
equal
deleted
inserted
replaced
| 2:db0f44260207 | 3:715e125409e2 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="ngchm_dependencies" version="1.2"> | 3 <package name="ngchm" version="1.2"> |
| 4 <install version="1.2"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="shell_command">cd $GALAXY_ROOT_DIR</action> | |
| 7 <action type="shell_command">hg clone https://insilico-bob@toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm</action> | |
| 8 <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/test-data/MDAheatmap</action> | |
| 6 <action type="move_directory_files"> | 9 <action type="move_directory_files"> |
| 7 <source>$INSTALL_DIR/MDAheatmap</source> | 10 <source_directory>./TestFiles</source_directory> |
| 8 <destination>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap</destination> | 11 <destination_directory>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination_directory> |
| 9 </action> | 12 </action> |
| 13 <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</action> | |
| 10 <action type="move_directory_files"> | 14 <action type="move_directory_files"> |
| 11 <source>$INSTALL_DIR/TestFiles</source> | 15 <source_directory>./MDAheatmap/</source_directory> |
| 12 <destination>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination> | 16 <destination_directory>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</destination_directory> |
| 13 </action> | 17 </action> |
| 14 <action type="shell_command">cd $GALAXY_ROOT_DIR/templates/MDAheatmap/templates</action> | 18 <action type="shell_command">cd $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/templates</action> |
| 15 <action type="shell_command">make</action> | 19 <action type="shell_command">make</action> |
| 16 </actions> | 20 </actions> |
| 17 </install> | 21 </install> |
| 18 <readme>Completed adding MDAnderson ngchm tool to Galaxy</readme> | 22 <readme>Completed adding MDAnderson ngchm tool to Galaxy</readme> |
| 19 </package> | 23 </package> |