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view tool_dependencies.xml @ 3:715e125409e2 draft

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author insilico-bob
date Fri, 30 Dec 2016 12:44:38 -0500
parents db0f44260207
children d3d47c77ec79
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<?xml version="1.0"?>
<tool_dependency>
 <package name="ngchm" version="1.2">
    <install version="1.0">
    <actions>
        <action type="shell_command">cd $GALAXY_ROOT_DIR</action>
        <action type="shell_command">hg clone https://insilico-bob@toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm</action>
        <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/test-data/MDAheatmap</action>
        <action type="move_directory_files">
           <source_directory>./TestFiles</source_directory>
            <destination_directory>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination_directory>
        </action>
        <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</action>
        <action type="move_directory_files">
           <source_directory>./MDAheatmap/</source_directory>
           <destination_directory>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</destination_directory>
        </action>
        <action type="shell_command">cd $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/templates</action>
        <action type="shell_command">make</action>
     </actions>
   </install>
   <readme>Completed adding MDAnderson ngchm tool to Galaxy</readme>
 </package>
</tool_dependency>