changeset 3:715e125409e2 draft

Uploaded
author insilico-bob
date Fri, 30 Dec 2016 12:44:38 -0500
parents db0f44260207
children d3d47c77ec79
files tool_dependencies.xml
diffstat 1 files changed, 12 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Dec 27 14:27:37 2016 -0500
+++ b/tool_dependencies.xml	Fri Dec 30 12:44:38 2016 -0500
@@ -1,17 +1,21 @@
 <?xml version="1.0"?>
 <tool_dependency>
- <package name="ngchm_dependencies" version="1.2">
-    <install version="1.2">
-  	  <actions>
+ <package name="ngchm" version="1.2">
+    <install version="1.0">
+    <actions>
+        <action type="shell_command">cd $GALAXY_ROOT_DIR</action>
+        <action type="shell_command">hg clone https://insilico-bob@toolshed.g2.bx.psu.edu/repos/insilico-bob/ngchm</action>
+        <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/test-data/MDAheatmap</action>
         <action type="move_directory_files">
-            <source>$INSTALL_DIR/MDAheatmap</source>
-            <destination>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap</destination>
+           <source_directory>./TestFiles</source_directory>
+            <destination_directory>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination_directory>
         </action>
+        <action type="shell_command">mkdir -p -m 777 $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</action>
         <action type="move_directory_files">
-            <source>$INSTALL_DIR/TestFiles</source>
-            <destination>$GALAXY_ROOT_DIR/test-data/MDAheatmap</destination>
+           <source_directory>./MDAheatmap/</source_directory>
+           <destination_directory>$GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/</destination_directory>
         </action>
-        <action type="shell_command">cd $GALAXY_ROOT_DIR/templates/MDAheatmap/templates</action>
+        <action type="shell_command">cd $GALAXY_ROOT_DIR/config/plugins/visualizations/MDAheatmap/templates</action>
         <action type="shell_command">make</action>
      </actions>
    </install>