Mercurial > repos > iracooke > msgfplus
changeset 13:c1df871ffa3c draft
Uploaded
| author | iracooke |
|---|---|
| date | Wed, 25 Jun 2014 23:03:32 -0400 |
| parents | 49231acb2258 |
| children | 32365fec702c |
| files | msgfplus_search.xml |
| diffstat | 1 files changed, 2 insertions(+), 5 deletions(-) [+] |
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--- a/msgfplus_search.xml Wed Jun 25 19:00:11 2014 -0400 +++ b/msgfplus_search.xml Wed Jun 25 23:03:32 2014 -0400 @@ -34,7 +34,6 @@ --precursor-ion-tol-units=$precursor_tolu -v $missed_cleavages $cleavage_semi - -f $fragment_ion_tol -p $precursor_ion_tol --instrument=$instrument --isotope-error-range=$isotope_error_range @@ -48,7 +47,7 @@ --java-mem=$java_mem #if $pepxml_output_use: --pepxml - #end unless + #end if </command> <inputs> @@ -70,7 +69,7 @@ <param name="fasta_file" type="data" format="fasta" label="Uploaded FASTA file" /> </when> </conditional> - <param name="input_file" type="data" format="mzml" multiple="false" label="MSMS File" help="An mzML file with MS/MS data"/> + <param name="input_file" type="data" format="mzml,mgf" multiple="false" label="MSMS File" help="An mzML file with MS/MS data"/> <param name="variable_mods" format="text" type="select" multiple="true" label="Variable Modifications" help="Multiple Selection Allowed"> <options from_file="msgfplus_mods.loc"> <column name="name" index="0" /> @@ -138,8 +137,6 @@ <option value="3">iTRAQPhospho</option> </param> - <param name="fragment_ion_tol" help="Fragment Ion Tolerance in Daltons" type="float" value="0.65" min="0" max="10000" label="Fragment ion tolerance"/> - <param name="precursor_ion_tol" help="Precursor Ion Tolerance (Da or ppm)" type="float" value="100" min="0" max="10000" label="Precursor ion tolerance"/> <param name="precursor_tolu" type="select" format="text"> <label>Precursor Ion Tolerance Units</label>