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comparison omssa.xml @ 3:255b5b6ec617 draft default tip

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Better defaults for omssa
author Ira Cooke <iracooke@gmail.com>
date Mon, 23 Jul 2012 14:48:31 +1000
parents 418f42b34049
children
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2:418f42b34049 3:255b5b6ec617
101 <option value="23">Semi-Chymotrypsin (FYWL)</option> 101 <option value="23">Semi-Chymotrypsin (FYWL)</option>
102 <option value="24">Semi-Glu-C</option> 102 <option value="24">Semi-Glu-C</option>
103 </param> 103 </param>
104 104
105 <param name="fragment_ion_tol" help="Fragment Ion Tolerance in Daltons" type="float" value="0.65" min="0" max="10000" label="Fragment ion tolerance"/> 105 <param name="fragment_ion_tol" help="Fragment Ion Tolerance in Daltons" type="float" value="0.65" min="0" max="10000" label="Fragment ion tolerance"/>
106 <param name="max_hit_expect" help="Expect values less than this are considered to be hits. Use a large value, eg 10000 when results will be processed downstream with Peptide Prophet" type="float" value="1.0" min="0" max="10000000" label="Maximum Expect value allowed in the hit list"/><!-- -he--> 106 <param name="max_hit_expect" help="Expect values less than this are considered to be hits. Use a large value, eg 10000 when results will be processed downstream with Peptide Prophet" type="float" value="10000.0" min="0" max="10000000" label="Maximum Expect value allowed in the hit list"/><!-- -he-->
107 <param name="intensity_cut_off" help="Peak intensity cut-off as a fraction of maximum peak intensity" type="float" value="0.0005" min="0" max="1" label="Peak intensity cut-off"/><!-- -ci--> 107 <param name="intensity_cut_off" help="Peak intensity cut-off as a fraction of maximum peak intensity" type="float" value="0.0005" min="0" max="1" label="Peak intensity cut-off"/><!-- -ci-->
108 108
109 109
110 <param name="precursor_ion_tol" help="Precursor Ion Tolerance (Da or ppm)" type="float" value="100" min="0" max="10000" label="Precursor ion tolerance"/> 110 <param name="precursor_ion_tol" help="Precursor Ion Tolerance (Da or ppm)" type="float" value="100" min="0" max="10000" label="Precursor ion tolerance"/>
111 <param name="precursor_tolu" type="select" format="text"> 111 <param name="precursor_tolu" type="select" format="text">