Mercurial > repos > iracooke > protk

diff pepxml_to_table.xml @ 0:a929e27eb203 draft

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author iracooke
date Thu, 21 Jun 2012 22:30:48 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pepxml_to_table.xml	Thu Jun 21 22:30:48 2012 -0400
@@ -0,0 +1,23 @@
+<tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.0">
+	<requirements><requirement type="package">protk</requirement></requirements>
+  <description>Converts a pepXML file to a tab delimited text file</description>
+
+
+<!-- Note .. the input file is assumed to be the first argument -->
+<command>pepxml_to_table.rb $input_file -o $output</command>
+
+
+<inputs>
+
+	<param name="input_file" type="data" format="pepxml"  multiple="false" label="Input File" help="A pepXML file"/>
+
+</inputs>
+<outputs>
+	<data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" />
+</outputs>
+
+<help>
+	Convert a pepXML file to Tab delimited text
+</help>
+
+</tool>