annotate tool_dependencies.xml @ 2:8f3813e7b0a6 default tip

Update

<?xml version="1.0"?>
<tool_dependency>
    <package name="galaxy_protk" version="1.2.2">
         <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
    </package>
    <package name="omssa" version="2.1.9">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
                <action type="shell_command">sh install_omssa.sh $INSTALL_DIR 1.2.2</action>
                <action type="move_file">
                    <source>install_omssa.sh</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PROTK_OMSSA_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installs OMSSA via the protk installer
            By default OMSSA will run with as many threads as are available. 
            You can limit the number of threads by setting the environment 
            variable PROTK_OMSSA_NTHREADS to the number of threads you would like OMSSA to use.
            Please see http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies 
            for details on setting environment variables for galaxy tools
        </readme>
    </package>

</tool_dependency>