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1 This package installs the Trans Proteomic Pipeline Commandline Tools
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3 Installing this package should proceed automatically however for the purpose
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4 of troubleshooting these are the steps it will perform
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5
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6 1. Download an install script from dropbox
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7 2. Install several perl packages locally (inside the install directory)
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8 3. Download the TPP source code
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9 4. Build the TPP
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10
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11 Intermediate files in this process are stored in ~/.protk/tmp/download and ~/.protk/tmp/build
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12
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13 Requirements:
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14 Please see instructions for package galaxy_protk and ensure those are met
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15
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16 In addition several system packages are required in order to build the TPP. The lists
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17 below work for specific test systems. If you have a different system you may need additional packages.
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18
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19 Ubuntu-12.04-LTS 64 Bit Server With OpenSSH preinstalled:
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20 # For Building the TPP
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21 subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev libfuse-dev libcurl4-openssl-dev libxml2-dev libgd2-xpm-dev
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22
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23 # For Installing perl modules locally (for the TPP)
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24 liblocal-lib-perl cpanminus
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25
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26 Centos 6 Server
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27 # For Building the TPP
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28 libcurl-devel libcurl libxml2 libxml2-devel expat-devel gd gd-devel expat gnuplot libxslt swig
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29
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30 # For Perl Module Management
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31 perl-local-lib
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32
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33 # On Centos you will need to install cpanminus manually with this command
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34 curl -L http://cpanmin.us | perl - --self-upgrade
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