Mercurial > repos > iracooke > protk_trans_proteomic_pipeline

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author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:17:06 -0500
parents cedd5e884349
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3 Installing this package should proceed automatically however for the purpose 3 Installing this package should proceed automatically however for the purpose
4 of troubleshooting these are the steps it will perform 4 of troubleshooting these are the steps it will perform
5 5
6 1. Download an install script from dropbox 6 1. Download an install script from dropbox
7 2. Install several perl packages locally (inside the install directory) 7 2. Install several perl packages locally (inside the install directory)
8 3. Download the TPP source code from dropbox 8 3. Download the TPP source code
9 4. Build the TPP 9 4. Build the TPP
10 10
11 Intermediate files in this process are stored in ~/.protk/tmp/download and ~/.protk/tmp/build 11 Intermediate files in this process are stored in ~/.protk/tmp/download and ~/.protk/tmp/build
12 12
13 Requirements: 13 Requirements:
14 This package depends on the galaxy_protk 14 Please see instructions for package galaxy_protk and ensure those are met
15 Please see instructions for that package before installing
16 15
17 In addition the following packages are required in order to build the TPP 16 In addition several system packages are required in order to build the TPP. The lists
18 subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev build-essential 17 below work for specific test systems. If you have a different system you may need additional packages.
19 libgd2-xpm libfuse-dev libcurl4-openssl-dev libxml2-dev libgd2-xpm-dev
20 18
19 Ubuntu-12.04-LTS 64 Bit Server With OpenSSH preinstalled:
20 # For Building the TPP
21 subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev libfuse-dev libcurl4-openssl-dev libxml2-dev libgd2-xpm-dev
22
23 # For Installing perl modules locally (for the TPP)
24 liblocal-lib-perl cpanminus
25
26 Centos 6 Server
27 # For Building the TPP
28 libcurl-devel libcurl libxml2 libxml2-devel expat-devel gd gd-devel expat gnuplot libxslt swig
29
30 # For Perl Module Management
31 perl-local-lib
32
33 # On Centos you will need to install cpanminus manually with this command
34 curl -L http://cpanmin.us | perl - --self-upgrade