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view protxml_to_table.xml @ 9:c04896f31ff7

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Added bash wrapper scripts and protxml to table
author Ira Cooke <iracooke@gmail.com>
date Mon, 10 Jun 2013 04:58:03 -0500
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<tool id="protxml_to_table_1" name="ProtXML to Table" version="1.0.1">
	<requirements>
	    <requirement type="package" version="1.2.2">galaxy_protk</requirement>
   </requirements>

	<description>Converts a ProtXML file to a table</description>

	<command>
		rvm 1.9.3@protk-1.2.2 do protxml_to_table.rb 

		$input_file 
		-o $output 
	</command>

	<inputs>	
		
		<param format="protxml" name="input_file" type="data" label="ProtXML File to Convert"/>

	</inputs>


	<outputs>
		<data format="tabular" name="output" />
	</outputs>


  <help>

**What it does**

Converts a ProtXML file to a tab separated table 

  </help>

</tool>