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annotate protxml_to_table.xml @ 9:c04896f31ff7

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Added bash wrapper scripts and protxml to table
author Ira Cooke <iracooke@gmail.com>
date Mon, 10 Jun 2013 04:58:03 -0500
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1 <tool id="protxml_to_table_1" name="ProtXML to Table" version="1.0.1">
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2 <requirements>
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3 <requirement type="package" version="1.2.2">galaxy_protk</requirement>
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4 </requirements>
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5
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6 <description>Converts a ProtXML file to a table</description>
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7
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8 <command>
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9 rvm 1.9.3@protk-1.2.2 do protxml_to_table.rb
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10
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11 $input_file
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12 -o $output
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13 </command>
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14
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15 <inputs>
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16
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17 <param format="protxml" name="input_file" type="data" label="ProtXML File to Convert"/>
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18
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19 </inputs>
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20
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21
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22 <outputs>
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23 <data format="tabular" name="output" />
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24 </outputs>
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25
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26
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27 <help>
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28
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29 **What it does**
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30
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31 Converts a ProtXML file to a tab separated table
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32
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33 </help>
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34
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35 </tool>