Mercurial > repos > iss > eurl_vtec_wgs_pt
comparison scripts/modules/seq_conf/escherichia_coli/typing.config @ 0:c6bab5103a14 draft
"planemo upload commit 6abf3e299d82d07e6c3cf8642bdea80e96df64c3-dirty"
author | iss |
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date | Mon, 21 Mar 2022 15:23:09 +0000 |
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comparison
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-1:000000000000 | 0:c6bab5103a14 |
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1 #reference_file (fasta file full path) | |
2 escherichia_coli.fasta | |
3 #length_extra_seq (int) | |
4 0 | |
5 #maximum_number_absent_genes (int) | |
6 1 | |
7 #maximum_number_genes_multiple_alleles (int) | |
8 1 | |
9 #minimum_read_coverage (x, int) | |
10 25 | |
11 #minimum_depth_presence (x, int) | |
12 5 | |
13 #minimum_depth_call (x, int) | |
14 10 | |
15 #minimum_depth_frequency_dominant_allele (0-1, double) | |
16 0.60 | |
17 #minimum_gene_coverage (0-100, int) | |
18 60 | |
19 #minimum_gene_identity (0-100, int) | |
20 70 |