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annotate scripts/modules/seq_conf/escherichia_coli/typing.config @ 0:c6bab5103a14 draft

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"planemo upload commit 6abf3e299d82d07e6c3cf8642bdea80e96df64c3-dirty"
author iss
date Mon, 21 Mar 2022 15:23:09 +0000
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1 #reference_file (fasta file full path)
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2 escherichia_coli.fasta
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3 #length_extra_seq (int)
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4 0
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5 #maximum_number_absent_genes (int)
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6 1
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7 #maximum_number_genes_multiple_alleles (int)
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8 1
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9 #minimum_read_coverage (x, int)
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11 #minimum_depth_presence (x, int)
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13 #minimum_depth_call (x, int)
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15 #minimum_depth_frequency_dominant_allele (0-1, double)
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16 0.60
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17 #minimum_gene_coverage (0-100, int)
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19 #minimum_gene_identity (0-100, int)
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