Mercurial > repos > iss > eurl_vtec_wgs_pt

comparison scripts/modules/seq_conf/escherichia_coli/typing.config @ 0:c6bab5103a14 draft

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"planemo upload commit 6abf3e299d82d07e6c3cf8642bdea80e96df64c3-dirty"
author iss
date Mon, 21 Mar 2022 15:23:09 +0000
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-1:000000000000 0:c6bab5103a14
1 #reference_file (fasta file full path)
2 escherichia_coli.fasta
3 #length_extra_seq (int)
4 0
5 #maximum_number_absent_genes (int)
6 1
7 #maximum_number_genes_multiple_alleles (int)
8 1
9 #minimum_read_coverage (x, int)
10 25
11 #minimum_depth_presence (x, int)
12 5
13 #minimum_depth_call (x, int)
14 10
15 #minimum_depth_frequency_dominant_allele (0-1, double)
16 0.60
17 #minimum_gene_coverage (0-100, int)
18 60
19 #minimum_gene_identity (0-100, int)
20 70