comparison abricate_list.xml @ 3:6e9aea89e388 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 962161e1dde26559d0bc1ce5d7b75d2f354606c5

2:2aa02d2a6af3

<tool id="abricate_list" name="ABRicate List" version="0.5">
    <requirements>
        <requirement type="package" version="0.5">abricate</requirement>
    </requirements>

    <version_command>abricate --version</version_command>

    <command detect_errors="exit_code"><![CDATA[
        abricate --list 2> '$report'
    ]]></command>

    <inputs>
    </inputs>

        <data name="report" format="txt" label="${tool.name} - list of databases"/>
    </outputs>

    <tests>
        <test>
            <output name="report" ftype="txt" file="output_list.txt" compare="contains"/>
        </test>
    </tests>

    <help><![CDATA[
**What it does**

3:6e9aea89e388

<tool id="abricate_list" name="ABRicate List" version="0.7">
    <requirements>
        <requirement type="package" version="0.7">abricate</requirement>
    </requirements>

    <version_command>abricate --version</version_command>

    <command detect_errors="exit_code"><![CDATA[
        abricate --list > '$report'
    ]]></command>

    <inputs>
    </inputs>

        <data name="report" format="txt" label="${tool.name} - list of databases"/>
    </outputs>

    <tests>
        <test>
            <output name="report" ftype="txt" file="output_list.txt" compare="contains" />
        </test>
    </tests>

    <help><![CDATA[
**What it does**