view abricate_list.xml @ 10:c2ef298da409 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 6285862fce2b3e298ef0333489392335091b5b0d"

<tool id="abricate_list" name="ABRicate List" version="@VERSION@" profile="@PROFILE@">
    <description>
        List all of abricate's available databases.
    </description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro='xrefs'/>
    <expand macro='edam_ontology'/>
    <expand macro="requirements" />
    <expand macro="version_command" />

    <command detect_errors="exit_code"><![CDATA[
        abricate --list > '$report'
    ]]></command>

    <inputs>
    </inputs>

    <outputs>
        <data name="report" format="txt" label="${tool.name} - list of databases"/>
    </outputs>

    <tests>
        <test>
            <output name="report" ftype="txt" file="output_list.txt" compare="contains" />
        </test>
    </tests>

    <help><![CDATA[
**What it does**

ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
    ]]></help>

    <expand macro="citations"/>
</tool>