comparison abricate_list.xml @ 4:78c75f134c16 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 1127a471ad5d1a75c311fa3be581476f5d8f9339

3:6e9aea89e388

<tool id="abricate_list" name="ABRicate List" version="0.7">
    <requirements>
        <requirement type="package" version="0.7">abricate</requirement>
    </requirements>

    <version_command>abricate --version</version_command>

    <command detect_errors="exit_code"><![CDATA[
        abricate --list > '$report'
    ]]></command>

**What it does**

ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
    ]]></help>

    <citations>
        <citation type="bibtex">
@UNPUBLISHED{Seemann2016,
    author = {Seemann, Torsten},
    title = {ABRicate: mass screening of contigs for antiobiotic resistance genes},
    year = {2016},
    url = {https://github.com/tseemann/abricate},
}
        </citation>
    </citations>
</tool>

4:78c75f134c16

<tool id="abricate_list" name="ABRicate List" version="@VERSION@">
    <description>
        List all of abricate's available databases.
    </description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="version_command" />

    <command detect_errors="exit_code"><![CDATA[
        abricate --list > '$report'
    ]]></command>

**What it does**

ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
    ]]></help>

    <expand macro="citations"/>
</tool>