diff test-data/test.gbk @ 2:2aa02d2a6af3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test.gbk	Tue Jul 18 13:56:16 2017 -0400
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+LOCUS       STANORAX                1601 bp    DNA     linear   BCT 27-MAY-1993
+DEFINITION  Staphylococcus aureus fluoroquinolone resistance protein (norA)
+            gene, complete cds.
+ACCESSION   M97169
+VERSION     M97169.1
+KEYWORDS    fluoroquinolone resistance protein; norA gene.
+SOURCE      Staphylococcus aureus
+  ORGANISM  Staphylococcus aureus
+            Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae;
+            Staphylococcus.
+REFERENCE   1  (bases 1 to 1601)
+  AUTHORS   Kaatz,G.W., Seo,S.M. and Ruble,C.A.
+  TITLE     Efflux-mediated fluoroquinolone resistance in Staphylococcus aureus
+  JOURNAL   Antimicrob. Agents Chemother. 37 (5), 1086-1094 (1993)
+   PUBMED   8517696
+FEATURES             Location/Qualifiers
+     source          1..1601
+                     /organism="Staphylococcus aureus"
+                     /mol_type="genomic DNA"
+                     /db_xref="taxon:1280"
+     gene            117..1412
+                     /gene="norA"
+     regulatory      117..122
+                     /regulatory_class="minus_35_signal"
+                     /gene="norA"
+                     /note="putative"
+     regulatory      141..146
+                     /regulatory_class="minus_10_signal"
+                     /gene="norA"
+     CDS             246..1412
+                     /gene="norA"
+                     /function="fluoroquinolone efflux"
+                     /standard_name="NORA1199 wild-type gene"
+                     /codon_start=1
+                     /transl_table=11
+                     /protein_id="AAA26658.1"
+                     /translation="MNKQILVLYFNIFLIFLGIGLVIPVLPVYLKDLGLTGSDLGLLV
+                     AAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAIGQNFLILMLSRVIGG
+                     MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFY
+                     FAGALGILAFIMSIVLIHDPKKVSTNGFQKLEPQLLTKINWKVFITPVILTLVLSFGL
+                     SAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL
+                     IYSVIVLVLLVIADGYWTIMVISFVVFIGFDMIRPAITNYFSNIAGDRQGFAGGLNST
+                     FTSMGNFIGPLIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKQQDL"
+ORIGIN
+        1 ctagtagtat agtatgatta cttttttgca atttcatatg atcaatcccc tttattttaa
+       61 tatgtcatta attatacaat taaatggaaa atagtgataa ttacaaagaa aaaatattgt
+      121 caaatgtagc aatattgtaa tacaatatag aaacttttta cgaatattta gcatgaattg
+      181 caatctgtcg tggaaaagaa aaataacagc ttgaagagtg acaagtagaa aaaagaggtg
+      241 agcaaatgaa taaacagatt ttggtattat attttaatat tttcttaatt tttttaggta
+      301 tcggtctagt gataccagtc ttacctgttt atttaaaaga tttggggtta actggtagtg
+      361 atttaggatt attagttgct gctttcgcct tatctcaaat gattatatcg ccattcggtg
+      421 gtacgttagc tgataaatta ggaaagaaat taattatatg tataggatta attttgtttt
+      481 cagtgtcaga atttatgttt gctatcggtc agaatttttt aattttgatg ttatcaaggg
+      541 ttatcggtgg tatgagtgct ggtatggtta tgcctggggt gacaggttta atagctgata
+      601 tttcaccaag ccatcaaaaa gcaaaaaact ttggctacat gtcagcgatt atcaattcag
+      661 gattcatttt aggaccaggg attggtggat ttatggcaga agtttcacat cgtatgccat
+      721 tttattttgc aggtgcatta ggtattctag catttataat gtcaattgta ttgattcacg
+      781 accctaaaaa agtttcgaca aatggattcc aaaagttgga gccacaattg ctaacgaaaa
+      841 ttaactggaa agtgtttatt acaccagtta ttctaacact tgtattatcg tttggtttat
+      901 ctgcatttga aacattgtat tcactataca cagctgacaa ggtaaattat tcacctaaag
+      961 atatttcgat tgcaattaca ggtggcggta tctttggtgc acttttccaa atttatttct
+     1021 ttgataaatt tatgaaatac ttctctgagt taacatttat tgcatggtca ttaatatatt
+     1081 cagttattgt attagtgcta ttagttattg ccgatggtta ctggacaatt atggtaataa
+     1141 gctttgttgt ctttatcggg ttcgatatga taagacctgc tattacaaat tatttttcaa
+     1201 atattgctgg tgatagacag ggatttgcag gtgggttaaa ctcaacattc actagcatgg
+     1261 ggaattttat aggtccttta atcgcaggtg cgttatttga tgtgcacatt gaagccccaa
+     1321 tttatatggc tataggtgtg tcattagctg gtgttgtcat tgttttaatt gaaaagcaac
+     1381 atagagctaa gttaaaacaa caagatttgt aatatcgcac atggttgtca ttcgattaat
+     1441 gtttttcgac aactaaagca tttcaaaata agcatcgatt ttcttacaat tatagtgaag
+     1501 aaaagtcgat gctttaaatt tataaagatt aaaaactttt aaatgtttta gtctttatat
+     1561 ttaaatgtta tatgtaacaa aaaatgattt tgagtaataa a
+//