Mercurial > repos > iuc > abricate

annotate test-data/test.gbk @ 2:2aa02d2a6af3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
author iuc
date Tue, 18 Jul 2017 13:56:16 -0400
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2
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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1 LOCUS STANORAX 1601 bp DNA linear BCT 27-MAY-1993
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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2 DEFINITION Staphylococcus aureus fluoroquinolone resistance protein (norA)
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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3 gene, complete cds.
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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4 ACCESSION M97169
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5 VERSION M97169.1
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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6 KEYWORDS fluoroquinolone resistance protein; norA gene.
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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7 SOURCE Staphylococcus aureus
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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8 ORGANISM Staphylococcus aureus
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9 Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae;
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10 Staphylococcus.
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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11 REFERENCE 1 (bases 1 to 1601)
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12 AUTHORS Kaatz,G.W., Seo,S.M. and Ruble,C.A.
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13 TITLE Efflux-mediated fluoroquinolone resistance in Staphylococcus aureus
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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14 JOURNAL Antimicrob. Agents Chemother. 37 (5), 1086-1094 (1993)
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15 PUBMED 8517696
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16 FEATURES Location/Qualifiers
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17 source 1..1601
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18 /organism="Staphylococcus aureus"
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19 /mol_type="genomic DNA"
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20 /db_xref="taxon:1280"
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21 gene 117..1412
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22 /gene="norA"
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23 regulatory 117..122
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24 /regulatory_class="minus_35_signal"
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25 /gene="norA"
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26 /note="putative"
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27 regulatory 141..146
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28 /regulatory_class="minus_10_signal"
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29 /gene="norA"
2aa02d2a6af3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
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30 CDS 246..1412
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31 /gene="norA"
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32 /function="fluoroquinolone efflux"
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33 /standard_name="NORA1199 wild-type gene"
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34 /codon_start=1
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35 /transl_table=11
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36 /protein_id="AAA26658.1"
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37 /translation="MNKQILVLYFNIFLIFLGIGLVIPVLPVYLKDLGLTGSDLGLLV
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38 AAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAIGQNFLILMLSRVIGG
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39 MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFY
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40 FAGALGILAFIMSIVLIHDPKKVSTNGFQKLEPQLLTKINWKVFITPVILTLVLSFGL
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41 SAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL
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42 IYSVIVLVLLVIADGYWTIMVISFVVFIGFDMIRPAITNYFSNIAGDRQGFAGGLNST
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43 FTSMGNFIGPLIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKQQDL"
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44 ORIGIN
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45 1 ctagtagtat agtatgatta cttttttgca atttcatatg atcaatcccc tttattttaa
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46 61 tatgtcatta attatacaat taaatggaaa atagtgataa ttacaaagaa aaaatattgt
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47 121 caaatgtagc aatattgtaa tacaatatag aaacttttta cgaatattta gcatgaattg
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48 181 caatctgtcg tggaaaagaa aaataacagc ttgaagagtg acaagtagaa aaaagaggtg
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49 241 agcaaatgaa taaacagatt ttggtattat attttaatat tttcttaatt tttttaggta
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50 301 tcggtctagt gataccagtc ttacctgttt atttaaaaga tttggggtta actggtagtg
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51 361 atttaggatt attagttgct gctttcgcct tatctcaaat gattatatcg ccattcggtg
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52 421 gtacgttagc tgataaatta ggaaagaaat taattatatg tataggatta attttgtttt
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53 481 cagtgtcaga atttatgttt gctatcggtc agaatttttt aattttgatg ttatcaaggg
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54 541 ttatcggtgg tatgagtgct ggtatggtta tgcctggggt gacaggttta atagctgata
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55 601 tttcaccaag ccatcaaaaa gcaaaaaact ttggctacat gtcagcgatt atcaattcag
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56 661 gattcatttt aggaccaggg attggtggat ttatggcaga agtttcacat cgtatgccat
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57 721 tttattttgc aggtgcatta ggtattctag catttataat gtcaattgta ttgattcacg
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58 781 accctaaaaa agtttcgaca aatggattcc aaaagttgga gccacaattg ctaacgaaaa
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59 841 ttaactggaa agtgtttatt acaccagtta ttctaacact tgtattatcg tttggtttat
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60 901 ctgcatttga aacattgtat tcactataca cagctgacaa ggtaaattat tcacctaaag
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61 961 atatttcgat tgcaattaca ggtggcggta tctttggtgc acttttccaa atttatttct
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62 1021 ttgataaatt tatgaaatac ttctctgagt taacatttat tgcatggtca ttaatatatt
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63 1081 cagttattgt attagtgcta ttagttattg ccgatggtta ctggacaatt atggtaataa
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64 1141 gctttgttgt ctttatcggg ttcgatatga taagacctgc tattacaaat tatttttcaa
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65 1201 atattgctgg tgatagacag ggatttgcag gtgggttaaa ctcaacattc actagcatgg
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66 1261 ggaattttat aggtccttta atcgcaggtg cgttatttga tgtgcacatt gaagccccaa
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67 1321 tttatatggc tataggtgtg tcattagctg gtgttgtcat tgttttaatt gaaaagcaac
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68 1381 atagagctaa gttaaaacaa caagatttgt aatatcgcac atggttgtca ttcgattaat
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69 1441 gtttttcgac aactaaagca tttcaaaata agcatcgatt ttcttacaat tatagtgaag
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70 1501 aaaagtcgat gctttaaatt tataaagatt aaaaactttt aaatgtttta gtctttatat
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71 1561 ttaaatgtta tatgtaacaa aaaatgattt tgagtaataa a
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72 //