Mercurial > repos > iuc > ampvis2_frequency

changeset 10:dfb9413825cc draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ampvis2 commit e0ad9ce8f508215ec6af69be2682a0faf38415da
author iuc
date Mon, 10 Nov 2025 13:04:46 +0000
parents 301a6ffaf2a2
children
files macros.xml test-data/output_metadata.tsv
diffstat 2 files changed, 70 insertions(+), 70 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Apr 01 09:56:09 2025 +0000
+++ b/macros.xml	Mon Nov 10 13:04:46 2025 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.8.9</token>
+    <token name="@TOOL_VERSION@">2.8.11</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">22.01</token>
     <xml name="header">
@@ -9,7 +9,7 @@
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">r-ampvis2</requirement>
             <requirement type="package" version="2.1.5">r-readr</requirement>
-            <requirement type="package" version="1.46.0">bioconductor-phyloseq</requirement>
+            <requirement type="package" version="1.50.0">bioconductor-phyloseq</requirement>
         </requirements>
         <version_command><![CDATA[
 echo $(R --version | grep "R version")", ampvis2 version" $(R --vanilla --slave -e "library(ampvis2, quietly = TRUE); sessionInfo()\$otherPkgs\$ampvis2\$Version" 2> /dev/null | grep -v -i "WARNING: ")
--- a/test-data/output_metadata.tsv	Tue Apr 01 09:56:09 2025 +0000
+++ b/test-data/output_metadata.tsv	Mon Nov 10 13:04:46 2025 +0000
@@ -1,68 +1,68 @@
-	SampleID	Plant	Date	Year	Period
-16SAMP-747	16SAMP-747	Aalborg East	2010-02-04	2010	Winter
-16S-AMP-1168	16S-AMP-1168	Aalborg West	2013-05-06	2013	Spring
-16SAMP-4603	16SAMP-4603	Aalborg East	2014-08-19	2014	Summer
-16S-AMP-1149	16S-AMP-1149	Aalborg East	2013-10-28	2013	Fall
-16SAMP-537	16SAMP-537	Aalborg West	2010-08-19	2010	Summer
-16S-AMP-1114	16S-AMP-1114	Aalborg West	2013-02-04	2013	Winter
-16SAMP-3893	16SAMP-3893	Aalborg East	2014-02-06	2014	Winter
-16SAMP-703	16SAMP-703	Aalborg East	2006-02-04	2006	Winter
-16SAMP-638	16SAMP-638	Aalborg East	2012-10-28	2012	Fall
-16SAMP-2611	16SAMP-2611	Aalborg East	2011-02-04	2011	Winter
-16S-AMP-1100	16S-AMP-1100	Aalborg West	2012-08-19	2012	Summer
-16SAMP-608	16SAMP-608	Aalborg East	2011-10-28	2011	Fall
-16SAMP-636	16SAMP-636	Aalborg East	2012-05-06	2012	Spring
-16SAMP-13288	16SAMP-13288	Aalborg West	2015-02-09	2015	Winter
-16SAMP-719	16SAMP-719	Aalborg East	2007-08-19	2007	Summer
-16S-AMP-1098	16S-AMP-1098	Aalborg West	2012-02-04	2012	Winter
-16SAMP-536	16SAMP-536	Aalborg West	2010-05-06	2010	Spring
-16S-AMP-1169	16S-AMP-1169	Aalborg West	2013-08-19	2013	Summer
-16SAMP-635	16SAMP-635	Aalborg East	2012-02-04	2012	Winter
-16SAMP-637	16SAMP-637	Aalborg East	2012-08-19	2012	Summer
-16SAMP-717	16SAMP-717	Aalborg East	2007-02-04	2007	Winter
-16S-AMP-1148	16S-AMP-1148	Aalborg East	2013-08-19	2013	Summer
-16SAMP-735	16SAMP-735	Aalborg West	2008-05-06	2008	Spring
-16SAMP-729	16SAMP-729	Aalborg East	2008-08-19	2008	Summer
-16SAMP-738	16SAMP-738	Aalborg East	2009-02-04	2009	Winter
-16SAMP-2613	16SAMP-2613	Aalborg West	2011-08-19	2011	Summer
-16SAMP-10925	16SAMP-10925	Aalborg East	2015-10-27	2015	Fall
-16SAMP-3913	16SAMP-3913	Aalborg East	2014-07-03	2014	Summer
-16SAMP-716	16SAMP-716	Aalborg West	2006-02-04	2006	Winter
-16SAMP-726	16SAMP-726	Aalborg West	2007-08-19	2007	Summer
-16SAMP-728	16SAMP-728	Aalborg East	2008-05-06	2008	Spring
-16SAMP-625	16SAMP-625	Aalborg West	2011-02-04	2011	Winter
-16SAMP-736	16SAMP-736	Aalborg West	2008-08-19	2008	Summer
-16SAMP-13281	16SAMP-13281	Aalborg East	2015-02-10	2015	Winter
-16SAMP-626	16SAMP-626	Aalborg West	2011-10-28	2011	Fall
-16SAMP-704	16SAMP-704	Aalborg East	2006-05-06	2006	Spring
-16SAMP-2612	16SAMP-2612	Aalborg East	2011-08-19	2011	Summer
-16SAMP-746	16SAMP-746	Aalborg West	2009-05-06	2009	Spring
-16SAMP-522	16SAMP-522	Aalborg East	2010-10-28	2010	Fall
-16SAMP-516	16SAMP-516	Aalborg West	2009-10-28	2009	Fall
-16S-AMP-1170	16S-AMP-1170	Aalborg West	2013-10-28	2013	Fall
-16S-AMP-1099	16S-AMP-1099	Aalborg West	2012-05-06	2012	Spring
-16SAMP-10932	16SAMP-10932	Aalborg West	2015-10-27	2015	Fall
-16SAMP-740	16SAMP-740	Aalborg East	2009-10-28	2009	Fall
-16SAMP-739	16SAMP-739	Aalborg East	2009-05-06	2009	Spring
-16SAMP-4597	16SAMP-4597	Aalborg West	2014-05-05	2014	Spring
-16SAMP-535	16SAMP-535	Aalborg West	2010-02-04	2010	Winter
-16SAMP-3941	16SAMP-3941	Aalborg West	2014-08-18	2014	Summer
-16SAMP-3953	16SAMP-3953	Aalborg West	2014-11-12	2014	Fall
-16SAMP-720	16SAMP-720	Aalborg East	2007-10-28	2007	Fall
-16SAMP-705	16SAMP-705	Aalborg East	2006-08-19	2006	Summer
-16SAMP-10907	16SAMP-10907	Aalborg East	2015-08-24	2015	Summer
-16SAMP-538	16SAMP-538	Aalborg West	2010-10-28	2010	Fall
-16SAMP-10911	16SAMP-10911	Aalborg West	2015-08-24	2015	Summer
-16SAMP-737	16SAMP-737	Aalborg West	2008-10-28	2008	Fall
-16SAMP-4591	16SAMP-4591	Aalborg West	2014-02-04	2014	Winter
-16SAMP-745	16SAMP-745	Aalborg West	2009-02-04	2009	Winter
-16SAMP-706	16SAMP-706	Aalborg East	2006-10-28	2006	Fall
-16SAMP-3946	16SAMP-3946	Aalborg East	2014-11-13	2014	Fall
-16S-AMP-1101	16S-AMP-1101	Aalborg West	2012-10-28	2012	Fall
-16SAMP-10896	16SAMP-10896	Aalborg West	2015-05-04	2015	Spring
-16SAMP-10891	16SAMP-10891	Aalborg East	2015-05-04	2015	Spring
-16SAMP-748	16SAMP-748	Aalborg East	2010-05-06	2010	Spring
-16SAMP-725	16SAMP-725	Aalborg West	2007-02-04	2007	Winter
-16SAMP-730	16SAMP-730	Aalborg East	2008-10-28	2008	Fall
-16S-AMP-1107	16S-AMP-1107	Aalborg East	2013-05-06	2013	Spring
-16SAMP-727	16SAMP-727	Aalborg East	2008-02-04	2008	Winter
+SampleID	Plant	Date	Year	Period
+16SAMP-747	Aalborg East	2010-02-04	2010	Winter
+16S-AMP-1168	Aalborg West	2013-05-06	2013	Spring
+16SAMP-4603	Aalborg East	2014-08-19	2014	Summer
+16S-AMP-1149	Aalborg East	2013-10-28	2013	Fall
+16SAMP-537	Aalborg West	2010-08-19	2010	Summer
+16S-AMP-1114	Aalborg West	2013-02-04	2013	Winter
+16SAMP-3893	Aalborg East	2014-02-06	2014	Winter
+16SAMP-703	Aalborg East	2006-02-04	2006	Winter
+16SAMP-638	Aalborg East	2012-10-28	2012	Fall
+16SAMP-2611	Aalborg East	2011-02-04	2011	Winter
+16S-AMP-1100	Aalborg West	2012-08-19	2012	Summer
+16SAMP-608	Aalborg East	2011-10-28	2011	Fall
+16SAMP-636	Aalborg East	2012-05-06	2012	Spring
+16SAMP-13288	Aalborg West	2015-02-09	2015	Winter
+16SAMP-719	Aalborg East	2007-08-19	2007	Summer
+16S-AMP-1098	Aalborg West	2012-02-04	2012	Winter
+16SAMP-536	Aalborg West	2010-05-06	2010	Spring
+16S-AMP-1169	Aalborg West	2013-08-19	2013	Summer
+16SAMP-635	Aalborg East	2012-02-04	2012	Winter
+16SAMP-637	Aalborg East	2012-08-19	2012	Summer
+16SAMP-717	Aalborg East	2007-02-04	2007	Winter
+16S-AMP-1148	Aalborg East	2013-08-19	2013	Summer
+16SAMP-735	Aalborg West	2008-05-06	2008	Spring
+16SAMP-729	Aalborg East	2008-08-19	2008	Summer
+16SAMP-738	Aalborg East	2009-02-04	2009	Winter
+16SAMP-2613	Aalborg West	2011-08-19	2011	Summer
+16SAMP-10925	Aalborg East	2015-10-27	2015	Fall
+16SAMP-3913	Aalborg East	2014-07-03	2014	Summer
+16SAMP-716	Aalborg West	2006-02-04	2006	Winter
+16SAMP-726	Aalborg West	2007-08-19	2007	Summer
+16SAMP-728	Aalborg East	2008-05-06	2008	Spring
+16SAMP-625	Aalborg West	2011-02-04	2011	Winter
+16SAMP-736	Aalborg West	2008-08-19	2008	Summer
+16SAMP-13281	Aalborg East	2015-02-10	2015	Winter
+16SAMP-626	Aalborg West	2011-10-28	2011	Fall
+16SAMP-704	Aalborg East	2006-05-06	2006	Spring
+16SAMP-2612	Aalborg East	2011-08-19	2011	Summer
+16SAMP-746	Aalborg West	2009-05-06	2009	Spring
+16SAMP-522	Aalborg East	2010-10-28	2010	Fall
+16SAMP-516	Aalborg West	2009-10-28	2009	Fall
+16S-AMP-1170	Aalborg West	2013-10-28	2013	Fall
+16S-AMP-1099	Aalborg West	2012-05-06	2012	Spring
+16SAMP-10932	Aalborg West	2015-10-27	2015	Fall
+16SAMP-740	Aalborg East	2009-10-28	2009	Fall
+16SAMP-739	Aalborg East	2009-05-06	2009	Spring
+16SAMP-4597	Aalborg West	2014-05-05	2014	Spring
+16SAMP-535	Aalborg West	2010-02-04	2010	Winter
+16SAMP-3941	Aalborg West	2014-08-18	2014	Summer
+16SAMP-3953	Aalborg West	2014-11-12	2014	Fall
+16SAMP-720	Aalborg East	2007-10-28	2007	Fall
+16SAMP-705	Aalborg East	2006-08-19	2006	Summer
+16SAMP-10907	Aalborg East	2015-08-24	2015	Summer
+16SAMP-538	Aalborg West	2010-10-28	2010	Fall
+16SAMP-10911	Aalborg West	2015-08-24	2015	Summer
+16SAMP-737	Aalborg West	2008-10-28	2008	Fall
+16SAMP-4591	Aalborg West	2014-02-04	2014	Winter
+16SAMP-745	Aalborg West	2009-02-04	2009	Winter
+16SAMP-706	Aalborg East	2006-10-28	2006	Fall
+16SAMP-3946	Aalborg East	2014-11-13	2014	Fall
+16S-AMP-1101	Aalborg West	2012-10-28	2012	Fall
+16SAMP-10896	Aalborg West	2015-05-04	2015	Spring
+16SAMP-10891	Aalborg East	2015-05-04	2015	Spring
+16SAMP-748	Aalborg East	2010-05-06	2010	Spring
+16SAMP-725	Aalborg West	2007-02-04	2007	Winter
+16SAMP-730	Aalborg East	2008-10-28	2008	Fall
+16S-AMP-1107	Aalborg East	2013-05-06	2013	Spring
+16SAMP-727	Aalborg East	2008-02-04	2008	Winter